Query= MSMg01no066_f23.b1 MSMg01no066_f23.b1 CHROMAT_FILE:
MSMg01no066_f23.b1 PHD_FILE: MSMg01no066_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:09 2005
(518 letters)
>mm_chr1_57322461_57323379
Length = 919
Score = 973 bits (503), Expect = 0.0
Identities = 515/519 (99%), Gaps = 1/519 (0%)
Strand = Plus / Plus
Query: 1 ggaattcc-aacagttctttccctgaacagtgcttcagaaacatagcccagcttcgtgtc 59
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattccaaacagttctttccttgaacagtgcttcagaaacatagcccagcttcgtgtc 260
Query: 60 acaaaacttcaagtcacttgataagtgattaaattatccaggcctcaaggagagtcatcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaacttcaagtcacttgataagtgattaaattatccaggcctcaaggagagtcatcc 320
Query: 120 agtgccgacccaatgcttggactctgaatttctatctataccttaatttattcaatgaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgccgacccaatgcttggactctgaatttctatctataccttaatttattcaatgaag 380
Query: 180 attttttttccagaccagcaatagactaggcccggagaataaaaccatctcttttcaaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttttttccagaccagcaatagactaggcccggagaataaaaccatctcttttcaaga 440
Query: 240 gcacctagttgaattgggagagaaaccttataaccagttcctgaagaataaatgatctac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacctagttgaattgggagagaaaccttataaccagttcctgaagaataaatgatctac 500
Query: 300 ccagccaagctgcagaaagtcttcagagaactgctgctggggatttgctacaggttctgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagccaagctgcagaaagtcttcagagaactgctgctggggatttgctacaggttctgg 560
Query: 360 gtaaccaggcacctacttcctaggaacaagttttacttctgttttgtaagaaatgtagat 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaccagtcacctacttcctaggaacaagttttacttctgttttgtaagaaatgtagat 620
Query: 420 gcttttaaggcactggagacatttccttcccttctgttaaagtcaggcatgacacttctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcttttaaggcactggagacatttccttcccttctgttaaagtcaggcatgacacttctc 680
Query: 480 acccaccccttcctcataattgcagtgtgtggatggcca 518
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 acccaccccttcctcataattgcagtgtgtgggtggcca 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space: 461772
Effective search space used: 461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_f23.g1 MSMg01no066_f23.g1 CHROMAT_FILE:
MSMg01no066_f23.g1 PHD_FILE: MSMg01no066_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:09 2005
(558 letters)
>mm_chr1_57460887_57461846
Length = 960
Score = 1050 bits (543), Expect = 0.0
Identities = 556/561 (99%), Gaps = 4/561 (0%)
Strand = Plus / Minus
Query: 1 ttacctctcagctggtgagagactttagactgcagggtgaggacctttctatcccatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttacctctcagctggtgagagactttagactgcagggtgaggacctttctatcccatgtc 652
Query: 61 cttaaatttccctgtcttcctacctcacctcagttgctgtaagtctgctagaagtggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cttaaatttccctgtcttcctacctcacctcagttgctgtaagtctgctagaagtggaac 592
Query: 121 aaagcaaatcaac--aaaaaaacagtttttcatcagtagtcatgtcattcattcctgtac 178
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aaagcaaatcaacaaaaaaaaacagtttttcatcagtagtcatgtcattcattcctgtac 532
Query: 179 tgagataactaattcttgaccacatatgttgcccaat-gttaagaagctttgataattcg 237
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 531 tgagataactaattcttgaccacatatgttgccc-atcgttaagaagctttgataattcg 473
Query: 238 cccttggtgagggtgtattgacatagcagccaactggtttataccaagtgatttaactct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cccttggtgagggtgtattgacatagcagccaactggtttataccaagtgatttaactct 413
Query: 298 tgatatggcttacaaactacatgtttactttataacagagggatttttaattcagtgaca 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 412 tgatatggcttacaaactacatgtttactttataacagagcgatttttaattcagtgaca 353
Query: 358 gttccatacagaaaataatgaattttgctcattttcactcctatcactcagtctcacccc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gttccatacagaaaataatgaattttgctcattttcactcctatcactcagtctcacccc 293
Query: 418 accctctcctattgcactccttgtcaacagacctctctcctacttacgtgtgtgtcactg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 accctctcctattgcactccttgtcaacagacctctctcctacttacgtgtgtgtcactg 233
Query: 478 ggcttatagcaatttcatatttatttatttggttctttttttttttaaagatttatttat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ggcttatagcaatttcatatttatttatttggttctttttttttttaaagatttatttat 173
Query: 538 ttttatgtacatgagtacact 558
|||||||||||||||||||||
Sbjct: 172 ttttatgtacatgagtacact 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 960
Length adjustment: 10
Effective length of query: 548
Effective length of database: 950
Effective search space: 520600
Effective search space used: 520600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
