BAC Information

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BAC

Clone NameMSMg01-066N22
Chromosome1 (Build37)
Map Location 94,791,898 - 94,792,198
singlet/doubletsinglet
Overlap geneAnkmy1
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1
Downstream geneDusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066N22.T7 (MSMg01no066_n22.b1)MSMg01-066N22.TJ (MSMg01no066_n22.g1)
ACCAG291741AG291742
length686779
length of high quality
(start - end)
426 (55 - 480)304 (106 - 409)
definitionCHROMAT_FILE: MSMg01no066_n22.b1 PHD_FILE: MSMg01no066_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:48 2005CHROMAT_FILE: MSMg01no066_n22.g1 PHD_FILE: MSMg01no066_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAAGAGATGAACATTCATGGATGCATGTGACCAGAGTTTTGAGAAAC
GTCTGGGAGATTAGGCAGTGTGTAGCTGGATTGGATATGCTGCAGGGGTC
CCCTGACTGGGTGATGTGTGGAATTGTAAAGGTGAAGCTAATCTATAGTG
GAAACTGCAAGATGTTGGAGATGTCGTGAACAAGGGATTCACCAAGGAAA
CTGGCATAAGAGAGGCCAGGTGTTTTGCGAACAGCAGGTCTGTAGGATTA
GGATTGCGGTTCCCGTTAGCTTTAACTGAATTTGATGCAGCCTAGAGTCA
TTTGAGAAAATAGTGCAAATTGAGGGGTTGCCCAGAGGAGATTGGCTTAT
GCACATGTCTGTGGGAAATTCTTCTGAATGCTAATTGTTTTAGGAGAACT
CAATCCACTATGAGCAGCACCATTCCCTAGGAAGGAGGTTCTGAGCTATA
TAGGAAAGCTGGGTGTCTATAAGCTCACCTGGAGGCCCTTAAAGAGCATT
CCTCCTCCATTACTGCTGTACTTCCTTGGCTGCAAGTTATTTCCCTGCCC
CGATTTATGCTGCATGGACGAGGAACCATGTCTTCCTGAATGCTCTGCTG
TGAATTCCTGCTCCGACTTGTCTCCGTGAATTATGA
CTCCCCCACCNNCNNCCCNCCACCNCNCCCCCCCCCCGCACCNNNAACAT
ATNTTNTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAG
AATCCGCGGAATTCCAGGACAGTTACCGCTACACAGAGAAACCCTGTCTC
AAAAAACAAACAAAAAAAATGTACCATGAATACTTATTTTTAATATATGA
AATAGCTCTTTCTTATACATATTATTTAAAATTTGCCTTTTTCCCCACCC
CTTAATTTATATATACATATACTTCACAATTATATGCAATCATATATTAG
AAAGTTTTGAAAGTTTCAATGAGTGTAGGTTTGTGTGCTCTGGGTACTGA
ATGACTCCCTCCCCCATATCTGGGCCCCATGCCTTTGTAGTAAGCGTTCC
CTCCAGTTATTCATGGCTGCCCTGCTGCCTGTAATTGGGCCTTTGCTTGA
GAGGGCCACAAGGTGGCGCCCTGCAGAGCCATTCTGTGTCTTCCTCTTGG
CCTGCAAGGCATATCCATCTCCATAGCCCATGTGCCTGTTGTTTCTTTGG
TTATTGAAGTCTCTGTGACGCGGAATCCCTACAGCTTATTTGTAATAGTT
TTACACTGTTTCCCGCTTGGCTCTACTGTGAATTAAATCCGTTATGCCCC
CCCCTTTTAGTGGAATTTTGTGTGTACATGTAAACAATATAATGCCGGGT
TTTTCTGTTTCTCCGTTGAACACCTTTGTACTGTACTTCTTAAACCTTTT
GCGTTTTGCCAAAGTTTCCCTTACTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_n22.g1 MSMg01no066_n22.g1 CHROMAT_FILE:
MSMg01no066_n22.g1 PHD_FILE: MSMg01no066_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:49 2005
         (304 letters)



>mm_chr1_94791641_94792344
          Length = 704

 Score =  542 bits (280), Expect = e-158
 Identities = 296/304 (97%), Gaps = 6/304 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccaggacagttacc---gctacacagagaaaccctgtctcaaaaaacaaacaaaa 60
           ||||||||||||||   ||   |||||||||||||||||||||||||||||||||| |||
Sbjct: 558 gaattccaggacag---ccagggctacacagagaaaccctgtctcaaaaaacaaaccaaa 502

                                                                       
Query: 61  aaaatgtaccatgaatacttatttttaatatatgaaatagctctttcttatacatattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatgtaccatgaatacttatttttaatatatgaaatagctctttcttatacatattat 442

                                                                       
Query: 121 ttaaaatttgcctttttccccaccccttaatttatatatacatatacttcacaattatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaatttgcctttttccccaccccttaatttatatatacatatacttcacaattatat 382

                                                                       
Query: 181 gcaatcatatattagaaagttttgaaagtttcaatgagtgtaggtttgtgtgctctgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaatcatatattagaaagttttgaaagtttcaatgagtgtaggtttgtgtgctctgggt 322

                                                                       
Query: 241 actgaatgactccctcccccatatctgggccccatgcctttgtagtaagcgttccctcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 actgaatgactccctcccccatatctgggccccatgcctttgtagtaagtgttccctcca 262

               
Query: 301 gtta 304
           ||||
Sbjct: 261 gtta 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)