BAC Information

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BAC

Clone NameMSMg01-066O11
Chromosome1 (Build37)
Map Location 137,201,055 - 137,201,299
singlet/doubletsinglet
Overlap geneTimm17a
Upstream genePpfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep
Downstream geneLmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066O11.T7 (MSMg01no066_o11.b1)MSMg01-066O11.TJ (MSMg01no066_o11.g1)
ACCAG291767AG291768
length717725
length of high quality
(start - end)
244 (72 - 315)199 (74 - 272)
definitionCHROMAT_FILE: MSMg01no066_o11.b1 PHD_FILE: MSMg01no066_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:51 2005CHROMAT_FILE: MSMg01no066_o11.g1 PHD_FILE: MSMg01no066_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATAATTGCGGCGCTAATACGACTCCTATTTGCAGGACTCCGCGGA
ATTCAGCACATTAGCATGAGGGGTCCTCTCATGCAACCATCTTAGCTTTG
TTTAAAAAATAGGCGGTGGCTGGAATGGACCCCTCAGCCATTGTCTGTGG
CTGTGGGTCTTGAAGAGTGGAAGAAGAAGTTTGAGAATGAGAGAACATAA
CTCTATGGATAGCCCTTTCCTTTAAAGCAGTCTTTTTATTAATGTCTTCA
GATGGACCGGTAGCCATGGTTGGGTCCGCTGCGATGGGCGGCATTCTCCT
AGCTTTAATTGAAGTATCTGGTATCTTGCTGACAAGATTTGCCTCTGCAC
AGTTTCCCAATGGTAAGACCTCTTTCTCTTGAGTGTTCTAAGTTCATACA
CGAGGGAACAGTTCTCTGACGTTAAGAAAGAATATGTTTTATTTGGTAAA
ACGGAGTGGTTTGTGATTCTTACTTTAGGTATCAATATATTATTTATATT
TTTGAGTCTATGATGACCTCAAAAGCTAGGTGTAAAAGTAGTGGTGGTGG
TCTGTAGAGAAGGCCCTCTTCTTGTGGAGGCAGGCTGCATTTTGTAGAGG
ATCCCAGGGGCTGGGTCCTGGATCCCGTTCGGTCTGGTTCAGCTAACTTG
TTACTCCTCCCCAGTGGCTAGGAATCTCGGGACCCCTTGGGCTCCACTAG
CAGTGCAGTGTTGTTGG
TCGATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGGTCAGCCCTGAACTTACTACATAG
TAAATTTGAAGCTAGGGCTGGGCAGTGGTGGCACATGCCTTTAATCACAG
CACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGT
CTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGACAAACCCTGTCTCG
AAAAAAAAAACCAAAAACAACAACAACAAAAAAAAAATTTGAAGCTAGCC
TGAGCTACAGGACATACACTTACTCACACACATCCACACATCCACATCCA
CACCCAAATACTTACACACACACACTCACACACTACACTCTCTCTCTCAC
ATACTCACTCTTAGACTCTATCTGGTTAATAATTTAACTAGGAAAGAATA
TACTAGGTCTAGGCTTAGAATCACTGTGATTTTGAGGCCAGCCTGGGCTA
CAGATGGTTTACCACATCAGGTGATCTTTAGAGTGGATTCTTGTTTTTTT
ACGGTTGTTTGAGATTGATGTAGAGATGTTTTTTTATATAATGTTGTGCG
CCGGGTGGTTTCATTCATTGGTTTAACATGCCTCTCCGGTGTGTAGATCG
AGCCGGGTGATGAGATTAGGCTGGCTTCCTGGGTGGCGAACGGGTGTTTT
CTGCCGTGGTGTGTGAGTTTAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_o11.b1 MSMg01no066_o11.b1 CHROMAT_FILE:
MSMg01no066_o11.b1 PHD_FILE: MSMg01no066_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:51 2005
         (244 letters)



>mm_chr1_137200855_137201500
          Length = 646

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%), Gaps = 2/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcctctcatgc-aaccatcttagctttgttt-aaaaaataggcggtggctggaatgga 58
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 ggtcctctcatgcaaaccatcttagctttgtttaaaaaaataggcggtggctggaatgga 386

                                                                       
Query: 59  cccctcagccattgtctgtggctgtgggtcttgaagagtggaagaagaagtttgagaatg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccctcagccattgtctgtggctgtgggtcttgaagagtggaagaagaagtttgagaatg 326

                                                                       
Query: 119 agagaacataactctatggatagccctttcctttaaagcagtctttttattaatgtcttc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagaacataactctatggatagccctttcctttaaagcagtctttttattaatgtcttc 266

                                                                       
Query: 179 agatggaccggtagccatggttgggtccgctgcgatgggcggcattctcctagctttaat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatggaccggtagccatggttgggtccgctgcgatgggcggcattctcctagctttaat 206

                
Query: 239 tgaag 243
           |||||
Sbjct: 205 tgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space:   149695
Effective search space used:   149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)