BAC Information

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BAC

Clone NameMSMg01-066P12
Chromosome1 (Build37)
Map Location 75,500,471 - 75,500,754
singlet/doubletsinglet
Overlap geneAW822216
Upstream geneUsp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik
Downstream geneInha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066P12.T7 (MSMg01no066_p12.b1)MSMg01-066P12.TJ (MSMg01no066_p12.g1)
ACCAG291817AG291818
length674773
length of high quality
(start - end)
366 (56 - 421)285 (130 - 414)
definitionCHROMAT_FILE: MSMg01no066_p12.b1 PHD_FILE: MSMg01no066_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:56 2005CHROMAT_FILE: MSMg01no066_p12.g1 PHD_FILE: MSMg01no066_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGTTTAGCTCTGTGTCCTATTTTTTTTAATGGGGTTATTTGAT
TTTTTTTGGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGAAATTAGT
CCCCTATCAGATTTAGGATTGGTAAAAGTTCTTTCCCAATCTGTTGGTGG
ACCTTTTGTCTTATTGACAGTGTCTTTTGCCTTATAGAAGCTTTTCAATT
TTATGAGGTCACATTTGTCAATTCTCAATTTTACAGCACAAGCTATTGCT
GATCTGTTCAGGAATTTTTCCTCAGTGCCCTTATCTTTGAGGCTTTTCCC
CACTTTCTGCTCAGTGCAGTAGCTGGATATAAAATTAACTCAAACAAATC
AGTGACCTTTCTCTACACAAAGGGTAAACAGGCTGAGAAAGAAATTAGGG
AAACAATGCCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGTGTG
ACTCTAACTAAGGAAGTGAAAGATCTTATATGATAAGAATTTCTAGCCTC
TGAAGAAAGAAATCCGAAGATCTTATAAGATGGTAAGATCTCCCATGCTC
ATGTATTGTCCCGACTATTATAGTAAAAATGTTTATTTTGTCTAAAGCCT
TCTACATTATTAATGCCTTCCCCA
GGGGGGGGGGGGGGNGCGGCGTGGGGGGGGGCCNNNNCCCCNNCNNCCTA
AAATNNNATTCTATTATTGCGGCCGCTAAACGACTCCTATTTTCAGTAGG
TGCGCGGATTCGAGAGTTTGTCCTTTACACTCCAGCACCACAATCCCGTG
TTCCCGACCCTCCACATCCTGCAGGGGCCGGGTGAACCGTAGGCGGGGTT
CTGTAGAAAGAGAAAGAGAGAAGGCTCAGGAGCAGGAGCAGGAGCGAGAG
ACTAGCCGAGGAGGATAACACATACTTGCTCTTCCTAGCAGGCTAGGAAT
GGCGGCCGAATTCCCAGCTAAGTTAGTTGGCCTAATTCCCAGCCTGACCC
CGATATCACCTTAGACACGTCTTATATTATTTCTGGGTCTCAATCTGCTC
ATGTGTTAAATGGTTGACGTTAGGCGTCAAGCATTGATCCTGATCAGTGG
TTCTCAAACCGTCCCTAACATTACATTAGCCCTCCCATTTCTCTACGGAT
CTGTATTGATTTTCATTTTAGTACATCATTCCAAGCATTTCATAACCTTT
TTTTTGCACTTGGGCTTCCTCAGACATCTTCTTTGCTTTAGTACTTTTTT
GCCTTGGCCTCTTCTGCCATAAATTTCATTTACTTCCCTGGAGGACATCC
TCAATTTTCTCACTGTATCTGGCAAAGACTTGTAGTAGGTATGCAATTGT
ATTACCCTTGTTACAGCTTCGCATTCCTCTTTGCCTTGGTTTCCACTGTT
CACCCCTGGTACTCTATGTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_p12.g1 MSMg01no066_p12.g1 CHROMAT_FILE:
MSMg01no066_p12.g1 PHD_FILE: MSMg01no066_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:56 2005
         (285 letters)



>mm_chr1_75500271_75500955
          Length = 685

 Score =  511 bits (264), Expect = e-149
 Identities = 279/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccagcaccacaatcccgtgttcccgaccctccacatcctgcaggggccgggtgaaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccagcaccacaatcccgtgttcccgaccctccacatcctgcaggggccgggtgaaccg 260

                                                                       
Query: 61  taggcggggttctgtagaaagagaaagagagaaggctcaggagcaggagcaggagcgaga 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 taggcggggttctgtagaaagagaaggagagaaggctcaggagcaggagcaggagcgaga 320

                                                                       
Query: 121 gactagccgaggaggataacacatacttgctcttcctagcaggctaggaatggcggccga 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactagctgaggaggataacacatacttgctcttcctagcaggctaggaatggcggccga 380

                                                                       
Query: 181 attcccagctaagttagttggcctaattcccagcctgaccccgatatcaccttagacacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 attcccagctaagttagttggcctaattcccagcctgaccccgatatcaccttggacacg 440

                                                       
Query: 241 tcttatattatttctgggtctcaatctgctcatgtgttaaatgg 284
           |||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttataacatttctgggtctcaatctgctcatgtgttaaatgg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)