BAC Information

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BAC

Clone NameMSMg01-067D14
Chromosome1 (Build37)
Map Location 170,048,459 - 170,048,601
singlet/doubletsinglet
Overlap genenone
Upstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genePbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067D14.T7 (MSMg01no067_d14.b1)MSMg01-067D14.TJ (MSMg01no067_d14.g1)
ACCAG292011AG292012
length696689
length of high quality
(start - end)
143 (117 - 259)204 (76 - 279)
definitionCHROMAT_FILE: MSMg01no067_d14.b1 PHD_FILE: MSMg01no067_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:16 2005CHROMAT_FILE: MSMg01no067_d14.g1 PHD_FILE: MSMg01no067_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
TACTTTTTTAGTTTCTTGGAGGCTAAAGAGACTGAGACTGGCCATTCCAA
AGAATGTTACACTCACCCATGACATTAATAAAATTGTGTTAAGAAGTACC
AGGCATGAGCAAATACGCTGGGGATTTTTAATATAATAAATGCGCTTTCA
GAGGCAGGAGATGAAATTTATGGATATCCAAAACCCTAGAACAGCACCGA
AGTGTGGTGGTGTTGCGGCGTGTTAAGGCTTCCCTTCCAAAGATAGTAGC
TGATTATGTCTAATCCTGCTTCCTGCCACTGAGAAGAAATAGCAATACCT
ATTTTTTTTTTCCTGACCCCCGCCCCCAGGTTCCACAGGTAATACTGCTC
TGACTGTCACCGACTATCATGAAAAGACTGCAACTTTGAGGGGGCCCTAT
AGCTTATAAGGGCTGCATAAAGGGTTTGAATCACTATGCACATAACTCTG
TGCATTGTATCTTGTGTCGCCGCATGCCCTGTGACGCAATATTCAACCTC
TGTTGATGATACCCTGCTCTGCTGCTCCTATTTTTTATGCCTCCTCAAAC
TGCGATCTAATGATAATTCTTAGACTCTTTTGCCAATCCAACCTTGTCTC
TTCCTTCTCTCTACCCTCATTTCCCCCTTCCTCTTGATTCCAACTA
AACAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGACATAGGAAGGACAATTC
TCAACTTCATATGGAAAACAACAAGACCCAGGATAACTAAAACAATCCTG
AAGAATAAAAGAACTGTCAGTTCTATCACCATTCCTGATTTCAAGTTGTA
CTACAGAGCTATAGTAATAAAAGCCTCATGGTATTCGCATACAATAGATA
CATTGATCAATGGAATAAAATTGAAGACCCAGACATAAATTCACACACCT
ATGGACATCTGATTTTTTTTGAAGAAGGTAAAAATACACACTGGACAAAA
GACAGTTTCATCATTTAACGCCCCCCCCCCCAACTGGATATCTGCATGTA
GAATAATGTAAATGGATCCCCACAAAAAAAAAATCCTACACGGGGGTGGG
GCCCTTAGTATATCAAAGACCTCTTCTTAATACCAATATGCACTGACCCT
GATAAAAAACAATTTGGTTAATAATCTTGAATCCATATGGCACATGAATA
TGACTTTTCTCTACAAAACTATCTAGTTTTTATAGTTGCATGATTGCTCT
TATTTTGAGCTTTAGTTTGTTTTCCCAACTGTACGAACCTATCATAATTT
TTATTGTTTTGGCATAAGCGAATCTATTTATAAACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_d14.b1 MSMg01no067_d14.b1 CHROMAT_FILE:
MSMg01no067_d14.b1 PHD_FILE: MSMg01no067_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:16 2005
         (143 letters)



>mm_chr1_170048259_170048801
          Length = 543

 Score =  277 bits (143), Expect = 3e-79
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatgacattaataaaattgtgttaagaagtaccaggcatgagcaaatacgctggggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ccatgacattaataaaattgtgttaagaagtaccaggcatgagcaaatacgctggggatt 284

                                                                       
Query: 61  tttaatataataaatgcgctttcagaggcaggagatgaaatttatggatatccaaaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttaatataataaatgcgctttcagaggcaggagatgaaatttatggatatccaaaaccc 224

                                  
Query: 121 tagaacagcaccgaagtgtggtg 143
           |||||||||||||||||||||||
Sbjct: 223 tagaacagcaccgaagtgtggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)