BAC Information

Click to search

BAC

Clone NameMSMg01-067E22
Chromosome1 (Build37)
Map Location 192,678,296 - 192,678,416
singlet/doubletsinglet
Overlap geneRps6kc1
Upstream genePtpn14, Smyd2, Prox1, LOC100039394, EG666975
Downstream geneAngel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067E22.T7 (MSMg01no067_e22.b1)MSMg01-067E22.TJ (MSMg01no067_e22.g1)
ACCAG292074AG292075
length723737
length of high quality
(start - end)
44 (67 - 110)121 (121 - 241)
definitionCHROMAT_FILE: MSMg01no067_e22.b1 PHD_FILE: MSMg01no067_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:22 2005CHROMAT_FILE: MSMg01no067_e22.g1 PHD_FILE: MSMg01no067_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAAACGACTACTATATCCAGAGGATCCGCGGAATTCAAT
CCCCGTACCCACATTATAGAAGGAGAGAACCAATTCCTGTAAGTTGCCCT
CTGACTCTACACATCCCCACGCTCGCATGCACATGTGCACACATGCACAC
ACATGCACACGCGCACACATTAATGTGCACGTGAGTGATTGTTGAAAAGG
AACCTGATCTATATTTCTCGGCTCTTGTTTTCCTCCTCACCTTATTCGTA
TGCTAGAACAGTGTCATGCCTTCCTGGTGTCTGCGATAGCTAGCGACTTG
TGAGTGCCTCTTTGTGTAGCGTCACAAGCTGATCCACCCAGAAACCACGT
GTTTTTTTTTTCCCCCTCCTCCCCCCCTCCTATAATTCTAATCTTGAAGC
TACACTCTCTCTGCAAAAAATAAAAAAAATAACTTTGGGTTCATTGTCCC
ATCTTTTTTATGGCCCATCTGCCTAGCCTAAGCTGTTCTGCTATTCAAGG
CACCCAATATGCTCTCTCTTTTCTCTCAGTGTCTGTACCACTCGTGATAT
TCTGCCCATCTTCTTCTTTCAAAAACTCCAGTTATCCATTGCCACCCTTA
CCCTTATTTTCTTCCAGCACCTCTTTTCCCCCGCCTGATTTCCATCCGGT
CTAACAAAACCTTCATTCCACTCTTTTCTTTCCATCCCCTCCCAAAGCAA
TTTCTTGTCTTTATTCAATTCTC
GCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTATCTTCTTGTTGGAGGGTAGGGCTGAGAT
TATAGGGGTGAGCTACCACATCCAGCTGTTTTTATTGTCCTTTTGTTTCT
AATGGGGAGAAGGCGCTGGGGAAGACTATATAGCATTGTGATTATTTTGT
AATTTTAGGAGGTCACATGCCTTGGGTCATCAGGACTGTCTGTCCTCAGT
AGGTCTTACTATTGGTCAGCAGGATTAGTTACGGTGACATTAGCACGGGT
ACCTCGATCCTTGTTTTTTATCCCATTGTGCGCTGGGTGTGTCTGAGGGT
TTGTTTTTTTTCCCCCCCCCCCCCCAGCCTCTAAGTTGTTGTTCTTGATC
TTGGTTACCCCCCCCCTGCCAAGTTTATTATCTACTCCTGTGCGCGGTTT
CCCATTCCCCCTCTGTTTTTATCCCCATTTTCCCTATCCTCCTCGTTCGT
CGATCACTCTTTCGATATTCCTCACTACCTTTTATGTCCGCCTCCCCCGT
TTTATCCCTTCACCTTTTTTATGTCCCTTAATTTATCTCACTACGTCTTT
CTTGCCCTATGTTCCCTTTTCTACCAATCTCTCTCTTCTTATCCTATATC
TCTGCCTTGCGATCTCCTTTTCATTGGTTCGCTCTTCTCTTTTCTCTCTC
TCTTCTCCTCCCTTTCTCTTTTTCACCTCTTTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_e22.g1 MSMg01no067_e22.g1 CHROMAT_FILE:
MSMg01no067_e22.g1 PHD_FILE: MSMg01no067_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:22 2005
         (121 letters)



>mm_chr1_192678096_192678616
          Length = 521

 Score =  234 bits (121), Expect = 1e-66
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagctgtttttattgtccttttgtttctaatggggagaaggcgctggggaagactata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagctgtttttattgtccttttgtttctaatggggagaaggcgctggggaagactata 262

                                                                       
Query: 61  tagcattgtgattattttgtaattttaggaggtcacatgccttgggtcatcaggactgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcattgtgattattttgtaattttaggaggtcacatgccttgggtcatcaggactgtc 202

            
Query: 121 t 121
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)