BAC Information

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BAC

Clone NameMSMg01-067J04
Chromosome1 (Build37)
Map Location 27,944,146 - 27,944,390
singlet/doubletsinglet
Overlap geneEG433281
Upstream geneLOC677427, LOC100040952
Downstream geneEG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067J04.T7 (MSMg01no067_j04.b1)MSMg01-067J04.TJ (MSMg01no067_j04.g1)
ACCAG292276AG292277
length719697
length of high quality
(start - end)
78 (37 - 114)251 (75 - 325)
definitionCHROMAT_FILE: MSMg01no067_j04.b1 PHD_FILE: MSMg01no067_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:42 2005CHROMAT_FILE: MSMg01no067_j04.g1 PHD_FILE: MSMg01no067_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTC
TTGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAGCGGAGGCCCG
CGCCATCTTATAATGCCCACTGCTCGCGGCACACACAGCTCGCCTCAGAG
ATTACTGGCGCCACACATGCGATTGCTCGCAGCACGTACCGGCTTTCCAC
ACTTTTGATCCCAGCGATAATTTCTTGACATTACGGACGCACCGGAAAGG
CCACGCGAATTATACTGAACATTTTTACTAATTTAACAACCACGACAACT
TCGACAACTTTTTTTATTTTAACCCTTGCTTACAGGCAATCTGACCCGCG
TATTTCTTTTTTTTACGCCCCCCCCTCCCCCCCTAGAGGAGAATTAATGT
ATAGCTCTTTTTCTCCCCGTTCAATAAAAAAAAAAAATATTCCCGTAGCG
GTTGGTCCTTCCTCCTCATTCTTTTTTTTATGTTTTATTTTCGCCGATCT
CTCTCCCTCCTTATCCAATAAAATACTATTTTTTCACCTCTACACCCACC
ATCCTACTTTACAGTCTTCTCTTTTATTACCCTATATACTACTCGCCCCT
TATTTTCACTTTTCAGTCATTATTTCCTTTTATCATATTTTTTCTCACTT
TCTCTTCTCCCTTTTTCGATTTTCTATCTAATTCTCCTCTTTCTCTACCT
TCACTTTCTTCTTCTTCTG
TCTATGAAGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAAAGCTAGACAGACATTCTGGAT
TTCTTGAGGAAAAGCAAAGTCTTCTCACAAAATGAAGTTCACTTTCAACA
CTCCATCTGTAAGAACATATAGAGCTTGTTGCGTTTGTGGGAATGGTAAA
AGAAAGTGTCAAACCAATTATCATGTAGTGAAACATTTTCTTTCTTCAAA
TATTATTGCAAAAAATTTTTTTTTTCACTTCTGACATAGAAAATGTATTG
AAGTTAAAACTCTATTGGCTACTATAGAGGTATATACCTCTACATATGGC
CCCAAGAGACCTATTTTTTTTAACTGCACCCCCCCCACAAGAATATGCTT
TTGTTTTTGGTGGTGAAATCTTTGATGAAAAGAAAATAACCCTCTTAACA
GAGAGTTAATATTCACTGTTACTGCCTGCTTAACTGCAAACCATGCTCTT
ATGACTCTTAGTTCTTATCATCTACAATATTCTTTTTAACACTATTTACA
ATGCACAATGTAAAAATATTGGTTTTTGTTGAACCTGTTGTTCATAACCA
ATATTTTTGTATCAAATTGAATCCCGGTTTCTCGATGTTAGACTTGAAAA
ATTGCTATTATGGTCTAGTTATTTTAATAAACCCATACTTAAAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_j04.g1 MSMg01no067_j04.g1 CHROMAT_FILE:
MSMg01no067_j04.g1 PHD_FILE: MSMg01no067_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:43 2005
         (251 letters)



>mm_chr1_27943942_27944591
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   aagctagacagacattctggatttcttgaggaaaagcaaagtcttctcacaaaatgaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aagctagacagacattctggatttcttgaggaaaagcaaagtcttctcacaaaatgaagt 264

                                                                       
Query: 65  tcactttcaacactccatctgtaagaacatatagagcttgttgcgtttgtgggaatggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcactttcaacactccatctgtaagaacatatagagcttgttgcgtttgtgggaatggta 324

                                                                       
Query: 125 aaagaaagtgtcaaaccaattatcatgtagtgaaacattttctttcttcaaatattattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagaaagtgtcaaaccaattatcatgtagtgaaacattttctttcttcaaatattattg 384

                                                                       
Query: 185 caaaaaattttttttttcacttctgacatagaaaatgtattgaagttaaaactctattgg 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaaaa-ttttttttttcacttctgacatagaaaatgtattgaagttaaaactctattgg 443

                 
Query: 245 ctacta 250
           ||||||
Sbjct: 444 ctacta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 650
Length adjustment: 9
Effective length of query: 242
Effective length of database: 641
Effective search space:   155122
Effective search space used:   155122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)