BAC Information

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BAC

Clone NameMSMg01-067K15
Chromosome1 (Build37)
Map Location 100,592,690 - 100,592,987
singlet/doubletsinglet
Overlap genenone
Upstream geneHisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067K15.T7 (MSMg01no067_k15.b1)MSMg01-067K15.TJ (MSMg01no067_k15.g1)
ACCAG292345AG292346
length709687
length of high quality
(start - end)
313 (46 - 358)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no067_k15.b1 PHD_FILE: MSMg01no067_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:50 2005CHROMAT_FILE: MSMg01no067_k15.g1 PHD_FILE: MSMg01no067_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTAGATTAACAGTTTTATGGACAAATAAACTAAATCTTTTCCTC
CTTGAGTTGCACAGTAGAAGTTCCCCTTGAGAACACAGTAGAAGTAACAC
TAAGACTGTTTCCTTTGAGAAACACTCTAATTTCTTCTGAAGGTAATATT
CATGATTAAGTTAGGAAATTCTCAACAGGCTCTATCTCTGACAATATGGT
ATGTCATGACTTTCTTTACTAATTGAATTTACTTATTGTATGTAAGCATA
CATATGCATCATATCAAATGTTTGTTGGTGAGAGGACTACTTGTGGAAAT
TGGTTCTTGTTTTCTTTCTTTTGACTCCTACCACTGGAACTCTGGTCATT
AGGCTTGTCAGTGAGGCACCTCTATCTGCTAGAAACATCATATCGTCCCT
GTGTGTCACCTCTTTATGTGAGGTCTCCTCTTATGATGACGTCCCTTAAG
TTCTACAAATGTACTCACAAATGATAATCCTATCCTTATATTTACTTTAT
AAATATGGATAACCTATTATTGTAGGTACTTGATCTATTTTTCTCTTTTT
TCTGGTTTTCATTTGAAACATATTTATTATTACTACTCGATAGTATAATT
TATATTGTTGAACTTGATAAAAAGTACTCTGAAGAATAATTACAATTTAG
ATCCACATA
TCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGTCCCATTTTTT
AATGGGGTTATTTGATTTTTCTCACGTCCACCTTGAGTTCTTTATATATA
TTGGATATTAGTCCCCTATCTGATTTGGGATAGGTAAAGATCTTTTCCCA
ATCTGTTGGTGGCCTTTTTGTTTTATTGATGGTGTCTTTTGCCTTGCAGA
AGCTTTGCAATTTTATGAGGTCCCATTTGTTGATCCTTGATCTTACAGCA
CAAGCCATTGCTGTTCTATTCTGGTATTTTTCCCCTGTACCCATATCTTC
GAGGCTTTTTTTTTTTTTCTTCTCCCCCCCCTTCAGTGTCTCTGGTTTTA
TGGGGCCTTATTCCACTTATATTTGACATTAATACAAGGAGAGAGGAGAT
GGATCAATTTGCATTCTTCTACATGATAACTGCCAGTTGTGCCAGCACCC
TTTGTTGAAAATGCTGTCTTTTTTCCACTGGATTGTTTTTGCTCCCTTGT
CAAAGATTAAGTAAGCATACATGTGTGGGTTCATTTCTGGGTCTTCCATT
CCTATTCCTTTGGACTACTTCTCTGTCGCTATACCAGAACAATGCCCTAT
TTTTTTTTTTGTTTTCACGGATGCTCCGTAATAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_k15.b1 MSMg01no067_k15.b1 CHROMAT_FILE:
MSMg01no067_k15.b1 PHD_FILE: MSMg01no067_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:50 2005
         (313 letters)



>mm_chr1_100592405_100593117
          Length = 713

 Score =  499 bits (258), Expect = e-146
 Identities = 293/310 (94%), Gaps = 13/310 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttagattaacagttttatggacaaataaactaaatcttttcctccttgagttg 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 583 gaattccttagattaacagttttatggacaaataaattaaatcttttcctccttgagttg 524

                                                                       
Query: 65  cacagtagaagttccccttga-gaacacagtagaagtaacactaagactgtttcctttga 123
           |||  | |  |||       | ||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cac--t-g--gtt-------atgaacacagtagaagtaacactaagactgtttcctttga 476

                                                                       
Query: 124 gaaacactctaatttcttctgaaggtaatattcatgattaagttaggaaattctcaacag 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 475 gaaacactctaatttcttctgaaggtaatattcatgataaagttaggaaattctcaacag 416

                                                                       
Query: 184 gctctatctctgacaatatggtatgtcatgactttctttactaattgaatttacttattg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gctctatctctgacaatatggtatgtcatgactttctttactaattgaatttacttattg 356

                                                                       
Query: 244 tatgtaagcatacatatgcatcatatcaaatgtttgttggtgagaggactacttgtggaa 303
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 355 tatgtaagcatacatatgcagcatatcaaatgtttgttggtgagaggacaacttgtggaa 296

                     
Query: 304 attggttctt 313
           ||||||||||
Sbjct: 295 attggttctt 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)