BAC Information

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BAC

Clone NameMSMg01-067L03
Chromosome1 (Build37)
Map Location 85,100,156 - 85,100,443
singlet/doubletsinglet
Overlap geneA530032D15Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneLOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L03.T7 (MSMg01no067_l03.b1)MSMg01-067L03.TJ (MSMg01no067_l03.g1)
ACCAG292369AG292370
length670695
length of high quality
(start - end)
47 (249 - 295)283 (81 - 363)
definitionCHROMAT_FILE: MSMg01no067_l03.b1 PHD_FILE: MSMg01no067_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:52 2005CHROMAT_FILE: MSMg01no067_l03.g1 PHD_FILE: MSMg01no067_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCCCACATCATAATTGCGGCGCCAAACGACTCCTATTTCCGAGGCGCGC
GGAANCCAAAATTTCCGCACGGAGACGCCNNAAANCANCCNCNGACCACA
NACGCACCCATTTTTCCCCCACCCAAACGAAACAGAGCGGGAGGCCGAGG
CACAGCCAAGCCAGCAAACGGGCGCACCGCCCCGCCCGCACGCACAGCGG
NGNACCACGAACACGCCGGGCGCCCCCGGAGGCAAGAAGCCATTTTATCT
CCTTGAGGTGGAGTTAAAAGATCATTTTGAGCCACCATGTGGATGCTGGT
AATCAAATTTTTTTTTTTCTGGAAGAGCAGCCAGAGCTCCCCAACCNNAG
TTTTTTTTTTCCCCCCCCCCCCACCCCAAGAAACAATCCTGATTCATAAG
CTGGAGATTTTCAGAGAAAAAAAAACAATATTCTCGAACACAGATTCTCA
GCTATGGCGATACTGCCCTCAGCGGTCACACATTATATTTTTATAGGAGG
TGTAAAAGATGAACAACACCTCACACATAGACCAGTCCATGCATGTCTAT
ATATAATTATTCCTACCCTACCATGACAAAGTTTTGGTGAGAAAATAAAT
ATCCTATGGTCTCTTCACCAACTACGCAAGCCTGGCTTATTATTTTTCTG
TCTGCTCTGACTGACGGTAC
NAACCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTATAT
AGCAAGTTCCAGACTAGTCAGGACTACCCAACAAACAAACACAAAGAATA
TCAAAGTTATCTGCTACCAAAAAAATCTTGAGAGGGTCTTTTTTTTAAAG
AACCTAAAATTTATAAGTAGTAACATATAAAAATATACAATAATTTTTAT
TTTAAACTTAAGGAGGCTGGCTATGTATATGTGCTTGCTCGTGTGTATGT
GCCTGGCATATGCCTGGGCAAGGAGTCCAGTTGCACTCCACCTTATGTTT
TGAGATTGGGTCTCTCATTTAACCCGCCCCCCCCCCACCTCATCCAGATT
AGCTGGTCAGTCATCTCCGGGGATCCAACTGACTATATTTTCCTAAGTCT
GGAGGTAAAAACACACTCCACTACACCCTGTTTTCATGTGGAATCTGAAA
TGAACTCTCCATATAATCTGAGTTGGAACTAAATTATTTCACAGACGGCC
AATTCTAATACTGTCCTTTCACATGTGATGCACGATGCACTGATCCAACT
AGAATATGTAGCAAATTTACTCAGAAATACATATTTGCCATGGCCGTTTT
TTCTAATTTCACCATTGTTCCTAATCTCACATTTCTTTAACACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l03.g1 MSMg01no067_l03.g1 CHROMAT_FILE:
MSMg01no067_l03.g1 PHD_FILE: MSMg01no067_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:52 2005
         (283 letters)



>mm_chr1_85099957_85100643
          Length = 687

 Score =  437 bits (226), Expect = e-127
 Identities = 271/288 (94%), Gaps = 5/288 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcctggtctatatagcaagttccagactagtcaggactacccaacaaacaaac 60
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 200 aaggccaacctggtctatatagcaagttccagactagtcaggactacacaacaaacaaac 259

                                                                       
Query: 61  acaaagaatatcaaagttatctgctaccaaaaaaatcttgagagggtctttttttt-aaa 119
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 260 acaaagaatatcaaagttatctgttaccaaaaaaatcttgagagggtctttttttttaaa 319

                                                                       
Query: 120 gaacctaaaatttataagtagtaacatataaaaatatacaataatttttattttaaactt 179
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 gaacctaaaatttatatgtagtaacatataaaaaaatacaataatttttattttaaactt 379

                                                                       
Query: 180 aaggaggctggctatgtatatg----tgcttgctcgtgtgtatgtgcctggcatatgcct 235
           |||||||||| ||||||||||     |||||||| |||||||||||||||||||||||||
Sbjct: 380 aaggaggctgtctatgtatatacacatgcttgcttgtgtgtatgtgcctggcatatgcct 439

                                                           
Query: 236 gggcaaggagtccagttgcactccaccttatgttttgagattgggtct 283
           |||||| |||||||||||  ||||||||||||||||||||| ||||||
Sbjct: 440 gggcaaagagtccagttgttctccaccttatgttttgagatggggtct 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 687
Length adjustment: 9
Effective length of query: 274
Effective length of database: 678
Effective search space:   185772
Effective search space used:   185772
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)