BAC Information

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BAC

Clone NameMSMg01-068G16
Chromosome1 (Build37)
Map Location 102,385,329 - 102,385,821
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068G16.T7 (MSMg01no068_g16.b1)MSMg01-068G16.TJ (MSMg01no068_g16.g1)
ACCAG292916AG292917
length658670
length of high quality
(start - end)
508 (36 - 543)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no068_g16.b1 PHD_FILE: MSMg01no068_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:50 2005CHROMAT_FILE: MSMg01no068_g16.g1 PHD_FILE: MSMg01no068_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTAG
TTCTCCAATCTATCAATGTTATTACAACTGCAGTCTGGTAAGAGAATCAT
GGGCACCTATATTGTTCTTCCACTTATTATTCTGGAAATGATTGCTTATG
TATGCTTGGTCCTCAACTGTCCTCCAGACCATGTTTCAGCTAAATAAATA
AACATACAAGGTTATACCTGTATGTGGCAAAGAAGGATAATGGAAGAGGG
GTACAGGCAAATGAAAACATGTTTCAGGTTTTGAAGGATGATTGAGTAAT
CTTTAATTTTCTTCACACAGATTGTAAATATGTTGTTTAAAAGACTCAGC
TTATCTGAATCACTTCTATAAACTTTTGGACTTTATTAACATCTCTTTGG
CTTTACCCTGAGTCTTCCTCACATCATTTGATTTGAATATGTGTTTTTCT
TCTTTCTTATGTTTGTGTTCACAAATTCTAAATAGTTTATCCACCTGAAG
GGAGAGAATATGCAACACACACACACACACATAGAGAGAGACAGACAGAC
AGACAGAGAGATAGAGAGAGAGAGAGAGAACCTTAGCAGAGCTTTTTCTC
AAATATTATTCAGAAAACTAAGTCTACTTAGACAGCCATCACCTGACACT
CTATGAAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGATGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTTCTGGGCACACATCCAGAAGATGCCCCAACAGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAGTTCCTAGCCAAATGGATGGACCTGTAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAG
TGGATATTAGCCCCAAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_g16.b1 MSMg01no068_g16.b1 CHROMAT_FILE:
MSMg01no068_g16.b1 PHD_FILE: MSMg01no068_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:50 2005
         (508 letters)



>mm_chr1_102385126_102386033
          Length = 908

 Score =  876 bits (453), Expect = 0.0
 Identities = 483/493 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactagttctccaatctatcaatgttattacaactgcagtctggtaagagaatc 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactagtgctacaatctatcaatgttattacaactgcagtctggtaagagaatc 263

                                                                       
Query: 64  atgggcacctatattgttcttccacttattattctggaaatgattgcttatgtatgcttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgggcacctatattgttcttccacttattattctggaaatgattgcttatgtatgcttg 323

                                                                       
Query: 124 gtcctcaactgtcctccagaccatgtttcagctaaataaataaacatacaaggttatacc 183
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 gtcttcaactgtcctccagaccatgtttcagctaaataaataagcatacaaggttatacc 383

                                                                       
Query: 184 tgtatgtggcaaagaaggataatggaagaggggtacaggcaaatgaaaacatgtttcagg 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 384 tgtatgtggcaaagaaggataatggaagagggatacaggcaaatgaaaacatgtttcagt 443

                                                                       
Query: 244 ttttgaaggatgattgagtaatctttaattttcttcacacagattgtaaatatgttgttt 303
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 ttttgaagaatgattgagtaatctttaattttcttcacacagattgtaaatgtgttgttt 503

                                                                       
Query: 304 aaaagactcagcttatctgaatcacttctataaacttttggactttattaacatctcttt 363
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 aaaagactcagcttatctgaatcacttctatacacttttggactttattaacatctcttt 563

                                                                       
Query: 364 ggctttaccctgagtcttcctcacatcatttgatttgaatatgtgtttttcttctttctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggctttaccctgagtcttcctcacatcatttgatttgaatatgtgtttttcttctttctt 623

                                                                       
Query: 424 atgtttgtgttcacaaattctaaatagtttatccacctgaagggagagaatatgcaacac 483
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgtttgtgttcacaaattctatatagtttatccacctgaagggagagaatatgcaacac 683

                        
Query: 484 acacacacacaca 496
           |||||||||||||
Sbjct: 684 acacacacacaca 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)