BAC Information

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BAC

Clone NameMSMg01-068L02
Chromosome1 (Build37)
Map Location 27,860,662 - 27,861,217
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952
Downstream geneEG433281, EG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068L02.T7 (MSMg01no068_l02.b1)MSMg01-068L02.TJ (MSMg01no068_l02.g1)
ACCAG293127AG293128
length702704
length of high quality
(start - end)
323 (51 - 373)556 (82 - 637)
definitionCHROMAT_FILE: MSMg01no068_l02.b1 PHD_FILE: MSMg01no068_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:12 2005CHROMAT_FILE: MSMg01no068_l02.g1 PHD_FILE: MSMg01no068_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCCTTTTTTTTTCTAGAGCTTTTAGGTGTGCTGTCAAGC
TGCTAGTGTGTGCTCTTTCTCTAGTTTCTTTTCAGCAGCATTTTTCACTC
ACATATGAGTTTTCCTCTTAGGACTGCTTTCATTGTGTCCCATATTTTTG
AATATGTTGTGGCTTCATTTTCATTCAACTCTAAAAATCCATTAATTCCT
TTATTTCTTCCTTGACCAAGGTATCATTGAATAGTGTGTTGTTCAGCTTC
CATGTCAATGTTGGCTTTCTACTATTTATATTGCTACTGAAGATCAGCCT
TAGTCCATGGTGATCTAATATGATGCATGGCATGATTTCAATATTTTTGT
ATCTGTTGAGGCCTGTTTTGTGACTGACTATATGGTCAATTTTGAAGAAA
GTATGATGAGGTGCTGAGAAGAAGATATATCCATTTGTTTTATGATAAAA
TGTTTTGCAGATATCTGTTAAAACCATTTGTTTCATAACTTCTGTTAGTT
TGACTGTGTCTCTGTTTATTTTCTGTTTCTAGGATCTGTCCATTGATGAA
AGGGGGGTGTTAAAGTCTCCCACTATTATTGTGTGTGGTGCAATGTGTTC
TTTGAGCTATACTAAAGTTTCTTTATTAAATGTGAATGCTCTTGCGTATG
GA
NNNNCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGGACAACTGGATCCT
TTTACGGCAAAGCTTTCATTGCTTCAACATAACGAAGACCCCGAACCTGG
AAAATGGCACTGCTTATATAGCCTGCAGCGTGACGTTTCAGTACCTGATG
TGGCGTGACAGCACCTGATTAGTTGCTCGCCCATCACCCCATTACTAAGC
CCCAAGATGGGAAGTGATTGGGTTTGAATTCACTCTTGTACTTGTGCATA
AGTCTTGTTTACTAGTTAGGCGCAGTGGAAGTCAGCACCATCTTATAATG
GCAATTGCTCACAGCACGGCTCTCCACAGTATATTAATAAGATGTATATA
CAGTACATGTATATAATGCAGTTTACACAGATCTTCTCTATGTCAGTTAC
TTACTAGTTAATCTTAGTTACATTTTTAGTTACTAAGTTTTACTTCCTAG
TTTTTCAGTGAGTTGGGAGGTCACAACCAAATCCAGAGCTGAGGAAGATG
GATAATCTCAATAGCAAACTTGCTCTGGACAATCTTTTCTCTCACACTTC
TAAAGTTGGTGTTATAGGCTCAATTCTATGCTGCACATGTATGTGGGTTC
TGTACACTCAAATCGAATTTTCAGGCTGAGAGGCTTAAGTTTTATTGTTC
CAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_l02.g1 MSMg01no068_l02.g1 CHROMAT_FILE:
MSMg01no068_l02.g1 PHD_FILE: MSMg01no068_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:13 2005
         (556 letters)



>mm_chr1_27860462_27861417
          Length = 956

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttggacaactggatccttttacggcaaagctttcattgcttcaacataacgaagaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 acttggacaactggatccttttacggcaaagctttcattgcttcaacataaggaagaccc 260

                                                                       
Query: 61  cgaacctggaaaatggcactgcttatatagcctgcagcgtgacgtttcagtacctgatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaacctggaaaatggcactgcttatatagcctgcagcgtgacgtttcagtacctgatgt 320

                                                                       
Query: 121 ggcgtgacagcacctgattagttgctcgcccatcaccccattactaagccccaagatggg 180
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 321 ggcgtgacagcacctgattagttgcttgcccatcaccccattactacgccccaagatggg 380

                                                                       
Query: 181 aagtgattgggtttgaattcactcttgtacttgtgcataagtcttgtttactagttaggc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgattgggtttgaattcactcttgtacttgtgcataagtcttgtttactagttaggc 440

                                                                       
Query: 241 gcagtggaagtcagcaccatcttataatggcaattgctcacagcacggctctccacagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagtggaagtcagcaccatcttataatggcaattgctcacagcacggctctccacagta 500

                                                                       
Query: 301 tattaataagatgtatatacagtacatgtatataatgcagtttacacagatcttctctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattaataagatgtatatacagtacatgtatataatgcagtttacacagatcttctctat 560

                                                                       
Query: 361 gtcagttacttactagttaatcttagttacatttttagttactaagttttacttcctagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcagttacttactagttaatcttagttacatttttagttactaagttttacttcctagt 620

                                                                       
Query: 421 ttttcagtgagttgggaggtcacaaccaaatccagagctgaggaagatggataatctcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttcagtgagttgggaggtcacaaccaaatccagagctgaggaagatggataatctcaa 680

                                                                       
Query: 481 tagcaaacttgctctggacaatcttttctctcacacttctaaagttggtgttataggctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagcaaacttgctctggacaatcttttctctcacacttctaaagttggtgttataggctc 740

                           
Query: 541 aattctatgctgcaca 556
           ||||||||||||||||
Sbjct: 741 aattctatgctgcaca 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)