BAC Information

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BAC

Clone NameMSMg01-069M16
Chromosome1 (Build37)
Map Location 98,158,955 - 98,159,266
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M16.T7 (MSMg01no069_m16.b1)MSMg01-069M16.TJ (MSMg01no069_m16.g1)
ACCAG293966AG293967
length718693
length of high quality
(start - end)
318 (42 - 359)---
definitionCHROMAT_FILE: MSMg01no069_m16.b1 PHD_FILE: MSMg01no069_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:38 2005CHROMAT_FILE: MSMg01no069_m16.g1 PHD_FILE: MSMg01no069_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCCATACTCTCCATCTTGACTTTTACTATTTCCTATAGGCCCTGTGGT
CCAATCTCAAAGAAGATTTCCCTCCCTATAAACGTTTTTATGAAAATCTT
GTAGGCAAATGCACAGAGAGTGGCATAGGAAGCTATTTTAGCTTTTGGGA
TGTATAGTATATTATTGTTAACTGTAGTTACCCTACTGTGCCAATGATAG
CACACAGAACTTCTGTGTAAACTGTGACTTGGTCATCATTGATCAGCACA
ATTTTAAAAGATAATTATGCATGTAATATAATTTATTGAAATTAATTATT
AAAATGTCTTGTATTGGCCCTTCCCCGCCTTTAAGTTTAGAATATAACAT
AATGTGGCAAATATGTATTTGTCTAAAGAATGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGCGTGTCTTTGCCCTCCTCCCTTTTCCCCCTTTTTCCCTTC
CCCCCCTTTCCCCCTTTCTCCTTTCCCTTTCCTTTCCCCCTTCCCCTCTT
TACCCTTTTCCTTTCCCCCATTATCCTTCCCCCTTTTCGCTCCTTTCTCT
TTTTTTCCTTCTTCCCTTTTCTTTTTCCTCACTCTAATTTTTTCCATTTT
TCACTCTATCTTTCTTACCACTTATTTTTTCCTTTTTTCCTTTTTTTTTC
TCTTTTTACCTTTTTCTT
GGCGGCGCCTGGTTCCAAAGAGAGGNGAACNAGAGAAGGTTCCCCCAAAA
ACGGNGGNAANNCAGAGCCCCANNNNNAAGGGGGNNANNGGATTTTCNAC
CGACAACCTACGGGAGGGCNGNAGANANAGGGGAAGAGAGNCCCCAAACA
GAACNAGGANAGGNAAAGACCGGACGGAGGCCACNCAGCCACACAGACAG
AGACGCCCCGCCAAGCACAACGCGCGCTATTTCACGAGGACCCAAGAGAC
AAGCCCCGAGCGGACAGCACAAGCCACGGCAGCACAGCANAGGATTTTTT
TTTTTGAACCCCAAACCACAAGGCGGGAGCAGATTTTGGTGGGTTCCCGN
NCCCGNGCCCCAGGATTGAGGGGGGAGGAGGGAGGCGGNGGGGNNNAAAA
AAAAAAAANNAAAAGGGGGGGGNNNGGGGCNNNNNCNNNNAGNNGAGAAG
GGCCAGCGGAGACACCACAACACGAAGCCAGAGCCGAGAACAGAACAAAG
GCGGGGCGCCGCGCACCAGCCAAAAAACCGGCGCCACAGCCGCGGGGCGA
AAGGAGCAGAGCAACGAAAGCACGACACCGAGCAGCCGCCCGACCGAAGG
AAGTACAAGACAACACGGCCCACAAGCCAACCCGCTTTTCCCGTAGTATG
TGTCATATATGAAAGTCCGGAGGTTGTCACTTGTTTGCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m16.b1 MSMg01no069_m16.b1 CHROMAT_FILE:
MSMg01no069_m16.b1 PHD_FILE: MSMg01no069_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:38 2005
         (318 letters)



>mm_chr1_98158751_98159464
          Length = 714

 Score =  489 bits (253), Expect = e-143
 Identities = 298/317 (94%), Gaps = 12/317 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccatactctccatcttgacttttactatttcctataggccctgtggtccaat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccatactctacatcttgacttttactatttcctataggccctgtggtccaat 264

                                                                       
Query: 65  ctcaaagaagatttccctccctataaacgtttttatgaaaatcttgtaggcaaatgcaca 124
           |||||||||||||| |||||||||||||||||||    ||||||||||||||| ||||||
Sbjct: 265 ctcaaagaagattttcctccctataaacgttttt----aaatcttgtaggcaactgcaca 320

                                                                       
Query: 125 gagagtggcataggaagctattttagcttttgggatgtatagtatattattgttaactgt 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gagagtggcataggaagctattttagcttttgggatgtatagtattttattgttaactgt 380

                                                                       
Query: 185 agttaccctactgtgccaatgatagcacacagaacttct---gtgtaaactgtgacttgg 241
           ||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||
Sbjct: 381 agttaccctactgtgccaatgatagtacacagaacttcttctgtgtaaactgtgacttgg 440

                                                                       
Query: 242 tcatcattgatcagcacaattttaaaagataattatgcatgtaat--ataatttattgaa 299
           ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 441 tcatcattgattagcacaattttaaaagataattatgcatgtaatttataatttattgaa 500

                            
Query: 300 -attaatt-attaaaat 314
            || |||| ||| ||||
Sbjct: 501 tat-aatttattgaaat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 714
Length adjustment: 9
Effective length of query: 309
Effective length of database: 705
Effective search space:   217845
Effective search space used:   217845
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)