Query= MSMg01no070_f10.b1 MSMg01no070_f10.b1 CHROMAT_FILE:
MSMg01no070_f10.b1 PHD_FILE: MSMg01no070_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:22 2005
(435 letters)
>mm_chr1_181531258_181532092
Length = 835
Score = 797 bits (412), Expect = 0.0
Identities = 427/432 (98%)
Strand = Plus / Minus
Query: 4 gaattctgtctgtgcggtagaaaggatacagtcctcttcctggaaataggtctcagctac 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaattctgtctgtgaggtagaaaggatacagtcctcttcctggaaataggtctcagctac 576
Query: 64 ctgtaaagacagaagaagaaaggagtatttgagtgaaaggaagaactagggagacagcaa 123
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 575 ctgtaaagacagaagaagaaaggagtatttgagtgaaaggacgaactagggagacagcaa 516
Query: 124 gatcttgtaaggctgctttgataggctactaacaaaatgatttctccacatccatgagtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gatcttgtaaggctgctttgataggctactaacaaaatgatttctccacatccatgagtt 456
Query: 184 cagaggaactctgtaggcacaggccacaatcctagggtctccgtcagcaaagctagcaca 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cagaggaactctgtaggcgcaggccacaatcctagggtctccgtcagcaaagctagcaca 396
Query: 244 agtaccctttagccgccacaccaccatgttctttccagtctagtcacgtcctaacaagct 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agtaccctttagccgccaaaccaccatgttctttccagtctagtcacgtcctaacaagct 336
Query: 304 tcacttagccccttaagtttaaaaaggaagaatgcttagggatgaggggaaggctatagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcacttagccccttaagtttaaaaaggaagaatgcttagggatgaggggaaggctatagg 276
Query: 364 cttacaaagctgcagtaggggtcaacaggtttaaaagattattattataaactaacagtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 275 cttacaaagctgcagtaggggtcaacaggtttaaaagattattattataaactaaaagtt 216
Query: 424 agaaatggccag 435
||||||||||||
Sbjct: 215 agaaatggccag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_f10.g1 MSMg01no070_f10.g1 CHROMAT_FILE:
MSMg01no070_f10.g1 PHD_FILE: MSMg01no070_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:22 2005
(398 letters)
>mm_chr1_181373281_181374078
Length = 798
Score = 677 bits (350), Expect = 0.0
Identities = 390/412 (94%), Gaps = 14/412 (3%)
Strand = Plus / Plus
Query: 1 agttcaccataaaagaatcatttgttgttagaaatgcactacatgtaccacagcaaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agttcaccataaaagaatcatttgttgttagaaatgcactacatgtaccacagcaaaccc 246
Query: 61 agcaccaaaaccacaaagggttaacaatttagttctctaatg--------------ctga 106
|||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 247 agcaccaaaaccacaaagagttaacaatttagttctctaatgctgaggcctgaggcctga 306
Query: 107 ggcctgaggcccggctgaaggtccacatcttctcaaggtccccatcttcgctgacttcac 166
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 307 ggcctgaggcccggctcaaggtccatatcttctcaaggtccccatcttcgctgacttcac 366
Query: 167 actgaagggagcagaattcctccacctaggtctgaaacagatgttgtagtcattaaaggt 226
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 367 actgaagggagcagaattcctccacctaggtctgaaacagatgctgtagtcattaaaggt 426
Query: 227 ccctggagccagctcagcaataccaggcatacacagctgctgacctgaggatcctgcctg 286
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccccggagccagctcagcaataccaggcatacacagctgctgacctgaggatcctgcctg 486
Query: 287 ccagactacagatgcttgcagagctatgcactgcctctgcgtccacagaggcagagaggt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccagactacagatgcttgcagagctatgcactgcctctgcgtccacagaggcagagaggt 546
Query: 347 gccatgccctgaatatttgatatcttccggcagactcccttctgttctagta 398
|||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 547 gccatgccctgaatatctgatatcttcgggcagacttccttctgttctagta 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
