BAC Information

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BAC

Clone NameMSMg01-070I09
Chromosome1 (Build37)
Map Location 135,345,791 - 135,345,983
singlet/doubletsinglet
Overlap genenone
Upstream geneRipk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13
Downstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070I09.T7 (MSMg01no070_i09.b1)MSMg01-070I09.TJ (MSMg01no070_i09.g1)
ACCAG294524AG294525
length668680
length of high quality
(start - end)
193 (57 - 249)---
definitionCHROMAT_FILE: MSMg01no070_i09.b1 PHD_FILE: MSMg01no070_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:37 2005CHROMAT_FILE: MSMg01no070_i09.g1 PHD_FILE: MSMg01no070_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCCTATTTCTAGAGGAGCCGCGGAATTCCCTGATTT
CCTCAGTTTACTGACAGTGATGGAATTAAGACTTCTACAACCACCACTGA
CATGCCACCAGGAATTAAACTCTCCTGAGCTCATCACACTTGGGAGTTTC
GAGAGTTTGTGCAGTGTCACACGGGTGTCCCTTCCAATGCACCTGTTGTA
GCTCCCAGGTGCCTCTGATCCACGAGCGGCGTTTGGCTTTGTCTCAGTCC
CCGGCAGGTGTGTGATGAACAGTCTGGTAAAACCAGACCAGACGCTCCAT
CTCTCTTAGCACCCTGGTTCCAGCCACAGGGGAAAGGCGCAAACACTGGG
AAGCCTTGATGTCTGACAGGATCCTTTTTTATTTTCATTTTTCTTTTAAG
GAGCTCCCACTACTTCTATGTTAGATTTTCCCTTAGTCTCCTGATATCCT
GATTATTGTGGTGGAGACAGCAAAAATGATTTCGGTATGCCCCTGAATGA
TGTACTTCATGTTGTCCTCAATTCTCATTAATTTATATCTATATCTCTCT
TTATTGACATCTTATGTTGCCCCTCAGATCCCTTCCTCTTTATTCTTTCG
CTCTATGACTCCGTATTTTTATCCTGCTTTATTTATGCTTCGATTTTCTC
CCGCGGTTTTCCCCACCA
NCCAATGTGCGGTAGCCTGGCGGCGCCTGTTCTAAAATGGAGGTGACCTA
TAGATTTCCCGCGGAATCTCGAATCTTGGCTAGGATCAAAGGTGAGGGTC
ATTCACTATCTGTCCTAGGTTGTTTGCGTCAAACACGTTGGAGGAAAATG
CATTCAGGTTTGAATCACAGGTTACTCACTTGGCCATACTGTGACCTCAG
GTTGAGTGACTTAACCTTTCAAGGCCTGATTTTTCTCTTCTCTATTCTAT
TATTTGATTCGTCCTGCAGATTGTGTGTGAATAATACAGCATACGGCCCA
CAGTACCTGTCTTTTACTGATTAAGTGACCAACTCTCCTTCCCGTGAGCA
TCCTTTATTTAATTGAATGTTTACCCTGAGTAAAGGGTTCACTCTATTTT
GTTTTGTATGTATAATGTTTCTCCTTGTGTATATTTAAAGCCTGTCTAAG
TTTACTCTTCAGTGTGTCATCATCGTGTTTAGAAGTTATGTCTGAGGAAA
ATGTGGCTCATGTACACATTCTCTGATTTTCTCTAGGTATTTTATTAATC
TCATCTCCCACAACCTTGTTTACTCAGAAATCACACTTGTCCTAGTTTTG
TGTTCCCTGTCTTTTTCCTTTACTCCTGTTTCACTCAAAACTCAACTATA
TATTAATTCAGTTAATTTTTATATTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_i09.b1 MSMg01no070_i09.b1 CHROMAT_FILE:
MSMg01no070_i09.b1 PHD_FILE: MSMg01no070_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:37 2005
         (193 letters)



>mm_chr1_135345591_135346183
          Length = 593

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactgacagtgatggaattaagacttctacaaccaccactgacatgccaccaggaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttactgacagtgatggaattaagacttctacaaccaccactgacatgccaccaggaatt 334

                                                                       
Query: 61  aaactctcctgagctcatcacacttgggagtttcgagagtttgtgcagtgtcacacgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaactctcctgagctcatcacacttgggagtttcgagagtttgtgcagtgtcacacgggt 274

                                                                       
Query: 121 gtcccttccaatgcacctgttgtagctcccaggtgcctctgatccacgagcggcgtttgg 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 273 gtcccttccaatgcacctgttgtagctcccaggtgcctctgatccaggagcggcgtttgg 214

                        
Query: 181 ctttgtctcagtc 193
           |||||||||||||
Sbjct: 213 ctttgtctcagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)