Query= MSMg01no070_i17.b1 MSMg01no070_i17.b1 CHROMAT_FILE:
MSMg01no070_i17.b1 PHD_FILE: MSMg01no070_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:39 2005
(641 letters)
>mm_chr1_171925940_171926980
Length = 1041
Score = 1216 bits (629), Expect = 0.0
Identities = 629/629 (100%)
Strand = Plus / Plus
Query: 12 gaattcattggatatatgggcatgaaatcaacctagtatgaagacagtctttcctcccaa 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcattggatatatgggcatgaaatcaacctagtatgaagacagtctttcctcccaa 271
Query: 72 gaattgaatcaattaaacaataaagaaatggaacaatttagattgttttctaaagggatt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaattgaatcaattaaacaataaagaaatggaacaatttagattgttttctaaagggatt 331
Query: 132 tttcattgtccttcattgctctaactctcagcttaaggctttatccatccctagagatag 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttcattgtccttcattgctctaactctcagcttaaggctttatccatccctagagatag 391
Query: 192 aaaactgtctttgaagtgccctttactgtgaggctctggctttcaaaagtgtaattgcca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaaactgtctttgaagtgccctttactgtgaggctctggctttcaaaagtgtaattgcca 451
Query: 252 tatggacactggtaatcaattttttttacctctgatttgtcaataattaaaatatgaact 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tatggacactggtaatcaattttttttacctctgatttgtcaataattaaaatatgaact 511
Query: 312 tgtcttctacaagatattctttcaacaaatcttactttttcttcttagcattattataca 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgtcttctacaagatattctttcaacaaatcttactttttcttcttagcattattataca 571
Query: 372 aataaggagtttctggcatcaactatttgtgttaatttaagttcttaagaatcgagaaga 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aataaggagtttctggcatcaactatttgtgttaatttaagttcttaagaatcgagaaga 631
Query: 432 aaataacattaccaagacatacagtttgaagcttaagagaattcaaggaatctaaaactt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aaataacattaccaagacatacagtttgaagcttaagagaattcaaggaatctaaaactt 691
Query: 492 agtccaagctgtgcttggccaaaataagacaaatgtaaatattagatattatgagaatat 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agtccaagctgtgcttggccaaaataagacaaatgtaaatattagatattatgagaatat 751
Query: 552 aaaacattagcacatggtgtttcagagagctgtggtcatagatcatcataaaatatgcat 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaaacattagcacatggtgtttcagagagctgtggtcatagatcatcataaaatatgcat 811
Query: 612 ggaaagaaggacctagattcaacaatatg 640
|||||||||||||||||||||||||||||
Sbjct: 812 ggaaagaaggacctagattcaacaatatg 840
Score = 209 bits (108), Expect = 5e-58
Identities = 114/116 (98%)
Strand = Plus / Plus
Query: 525 tgtaaatattagatattatgagaatataaaacattagcacatggtgtttcagagagctgt 584
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tgtaaatattagatattatgaaaatataaaacattagcacatggtgtttcagagagctgt 149
Query: 585 ggtcatagatcatcataaaatatgcatggaaagaaggacctagattcaacaatatg 640
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 150 ggtcatagatcatcataaaatatgcatggaacgaaggacctagattcaacaatatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_i17.g1 MSMg01no070_i17.g1 CHROMAT_FILE:
MSMg01no070_i17.g1 PHD_FILE: MSMg01no070_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:39 2005
(504 letters)
>mm_chr1_172013283_172014186
Length = 904
Score = 961 bits (497), Expect = 0.0
Identities = 497/497 (100%)
Strand = Plus / Minus
Query: 8 atttaacttttcttatgtctactttagtgctaaagaagaagatttcatcctactgatccc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atttaacttttcttatgtctactttagtgctaaagaagaagatttcatcctactgatccc 645
Query: 68 atggtgttttatgctgtggcttattcatttataaaccttattatcattattattccactg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 atggtgttttatgctgtggcttattcatttataaaccttattatcattattattccactg 585
Query: 128 aaaaaatactagacctttgctctcatgtaggtgctaaagactgtaggaaaacttgatttc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaaaaatactagacctttgctctcatgtaggtgctaaagactgtaggaaaacttgatttc 525
Query: 188 atcacactgtgtaagaaagactggaagggaaagcagctaggagctgcgggtgcctagatg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atcacactgtgtaagaaagactggaagggaaagcagctaggagctgcgggtgcctagatg 465
Query: 248 gatagcccaatgagagagcaagggggcctgtagccaagcaatgccaagcagaagagagag 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gatagcccaatgagagagcaagggggcctgtagccaagcaatgccaagcagaagagagag 405
Query: 308 gaagaggttttgccctcactggagagtaacttcactgactctgggaggaacgaggcacag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaagaggttttgccctcactggagagtaacttcactgactctgggaggaacgaggcacag 345
Query: 368 cctactgtggctacagagcaagggacagtgattgcatccaggagaagatgatgcggaaag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cctactgtggctacagagcaagggacagtgattgcatccaggagaagatgatgcggaaag 285
Query: 428 tacaggccactaggatcaagaaaacaccattaatctttggttgttgttgcaaaattgtgc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tacaggccactaggatcaagaaaacaccattaatctttggttgttgttgcaaaattgtgc 225
Query: 488 tttccaaagccttggtc 504
|||||||||||||||||
Sbjct: 224 tttccaaagccttggtc 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
