BAC Information

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BAC

Clone NameMSMg01-071B04
Chromosome1 (Build37)
Map Location 137,985,380 - 137,985,715
singlet/doubletsinglet
Overlap geneCacna1s
Upstream geneLgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5
Downstream geneKif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071B04.T7 (MSMg01no071_b04.b1)MSMg01-071B04.TJ (MSMg01no071_b04.g1)
ACCAG294944AG294945
length666620
length of high quality
(start - end)
335 (71 - 405)73 (65 - 137)
definitionCHROMAT_FILE: MSMg01no071_b04.b1 PHD_FILE: MSMg01no071_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:21 2005CHROMAT_FILE: MSMg01no071_b04.g1 PHD_FILE: MSMg01no071_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTGGATCTATAATTGCGGCGCTAATACGACTCCTATTCCAAGAGGATC
CGCGGAATTCGCATCTGCCCACTGGCCCTTCAAATCACTGTGCTCCAGTG
CAGGCTCGGGAGCCTTACCTGGGAAGTCAGCCGAAGGGTAGGGGTCTTTC
ACCTCATTGACGTTCGATTCAAACTCATCGATTTTCAGCTGTAGAAAGAA
CAGTGATGGTGGTGAGGAAGCAAAAACCGATGCTCGAACTTACTGGGCAT
GCTCCGTGGAGCCATTATGCAGCTTTCTGAATGTTCCCTATGACCCAAGA
GGCGGGTAGAGGTGGAGTTGTTATGTCTTACAGATAAGAAGCCAGGTCCG
GCAAAGTATACAACTCCAAGCCTGCGCTGGGCAAAGCCAAGGCTTTAGCT
CGTCTTAGTCTGTCCTCACCGTGGGCTCCCTTAGCTCGCTACAAGAGAAC
TCAGGCTATGCGGTGTAGCTTCTCTGCAGCCTAAGACTCCTGGGTCACAG
ACTCCCTTTCCTCACTCTCCATAGTGGCGAGCGGGGGCCCAGCTGAACCA
TGCATGTTCTACCTCTTAGTATAACACTGCGGAGCGGCTCGGGGGTTTGC
CTCCTTTGCTCTGCACAGGAATCTAATGAAGGCTGGTTCCCAGCATGAAG
GGTCTATTGCTTCTCC
ATTTTCATGAAGAGGAGGCTGGGGCCGCTGTCACAGAGTAGGGAACTAAA
ATACCCGCGGAATCCCTTTGAAGCTTTTGAAGCTGTCCTTTTAATGAATA
CAATAGCCCGCAAGCCCCATTCTTGATGCCCTCACCCAGTGTCCATCTTG
CCTCTCTTTCCATTGGGTTAAAAAAAAAATTTCCATTACCTCCTGGAACC
AAAAAGTGGGGGTTCCAAGCTTTCCAACCCCCAAGGGAACAACCCTTCTT
GGGTTGCAGAAAAAAAAAAACCTTTAAAAAAAGGGCAACCCTAAACCAAT
TTTCATTTTAAAAAAAAATTCTCAAACCCTCTCCTAATTTTTTCCTCAAG
GAAAAAAAATACCTTTTGAAAAGACCTTATAAAAAAAAAACCTCTTTTTT
TTTTTCCCCCCCCCACATAAAAACCCCCCCTTTAACATTTCGAAAACTTT
TAAAAAAAACCAACACCAAGGGGGGGGGTTTTACAAATACCCCCAACCCC
CCTCAAAAAACATACTTTACCCCCCACCACCCAAAAAATTATTTTTAAGA
CGCCCACAAAACACACACCAATTATAAATTATAAATATTTTTTTATAAAT
ATCCATTAACTTATATACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_b04.b1 MSMg01no071_b04.b1 CHROMAT_FILE:
MSMg01no071_b04.b1 PHD_FILE: MSMg01no071_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:21 2005
         (335 letters)



>mm_chr1_137985180_137985915
          Length = 736

 Score =  565 bits (292), Expect = e-165
 Identities = 325/336 (96%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggcccttcaa-atcactgtgctccagtgcaggctcgggagccttacctgggaagtca 59
           |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 536 actgacccttcaacatcactgtgctccagcgcaggctcgggagccttacctgggaagtca 477

                                                                       
Query: 60  gccgaagggtaggggtctttcacctcattgacgttcgattcaaactcatcgattttcagc 119
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 476 gccgaagggtaggggtctttcacctcattaacgtttgattcaaactcatcgattttcagc 417

                                                                       
Query: 120 tgtagaaagaacagtgatggtggtgaggaagcaaaaaccgatgctcgaacttactgggca 179
           ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 416 tgtagaaggaacagtgatggtggtgaggaagcaaaaactgatgctcaaacttactgggca 357

                                                                       
Query: 180 tgctccgtggagccattatgcagctttctgaatgttccctatgacccaagaggcgggtag 239
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 356 tgctccgtggagccattatgcagcttcctgaatgttccctacgacccaagaggcgggtag 297

                                                                       
Query: 240 aggtggagttgttatgtcttacagataagaagccaggtccggcaaagtatacaactccaa 299
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 296 aggtggagttgttatgtcttacagataagaagccaggtcccgcaaagtatacaactccaa 237

                                               
Query: 300 gcctgcgctgggcaaagccaaggctttagctcgtct 335
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gcctgcgctgggcaaagccaaggctttagctcgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 736
Length adjustment: 9
Effective length of query: 326
Effective length of database: 727
Effective search space:   237002
Effective search space used:   237002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)