Query= MSMg01no072_b03.b1 MSMg01no072_b03.b1 CHROMAT_FILE:
MSMg01no072_b03.b1 PHD_FILE: MSMg01no072_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:41 2005
(550 letters)
>mm_chr1_62405515_62406465
Length = 951
Score = 975 bits (504), Expect = 0.0
Identities = 534/544 (98%), Gaps = 1/544 (0%)
Strand = Plus / Plus
Query: 8 gaattcagaaaatactgccttgcctgataaatatcattctaggaccttggttggaaagaa 67
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcagaaaatactgggttgcctgataaatatcattctaggaccttggttggaaagaa 267
Query: 68 ctgaagtggataagtcaagtgtgtcactgttctcttcaaagcccagagtctgcagtcttt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctgaagtggataagtcaagtgtgtcactgttctcttcaaagcccagagtctgcagtcttt 327
Query: 128 cttcaaagagtgcagggcatgaagagtctgttattgaaaagctatattatctattgagcc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 328 cttcaaagagtgcagggcatgaagagtctgttattgaaaagctatattatctactgagcc 387
Query: 188 cctttcagaatccctgaatctatgaacttattagactacttgtggcatacctggtgaaca 247
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctttcagaatccccgaatctatgaacttattagactacttgtggcatacctggtgaaca 447
Query: 248 cacgaaataggtgaacgtctagatgtctaacctcagacgtttccactgccagagtcatgc 307
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cacgaagtaggtgaacgtctagatgtctaacctcagacgtttccactgccagagtcatgc 507
Query: 308 ctacggttatccacttgcatcaactgtatcaaataccctatggccatctatggcttggcc 367
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctacagttatccacttgcatcaactgtatcaaataccctatggccatctatggcttggcc 567
Query: 368 attagccagaagtgattaccagtgtgatagatctgtgggccaaaagagagaagggttagt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 attagccagaagtgattaccagtgtgatagatctgtgggccaaaagagagaagggttagt 627
Query: 428 tggaaaaaaa-gaagctaaatttataggatgaaatgagcaggaactgagcatagtcactg 486
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 628 tggaaaaaaaagaagctaaatttataggatgaaatgagcaggaactgaacaaagtcactg 687
Query: 487 cctacatctactaacatttaaattgccaaaattggggatattgattctcagtgtatcctt 546
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cctacatctattaacatttaaattgccaaaattggggatattgattctcagtgtatcctt 747
Query: 547 tggt 550
||||
Sbjct: 748 tggt 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_b03.g1 MSMg01no072_b03.g1 CHROMAT_FILE:
MSMg01no072_b03.g1 PHD_FILE: MSMg01no072_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:41 2005
(297 letters)
>mm_chr1_62525069_62525765
Length = 697
Score = 559 bits (289), Expect = e-164
Identities = 295/297 (99%)
Strand = Plus / Minus
Query: 1 agagtaatttataagagactccaaatatttttgttgttgtcgttacataaatggggatca 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 497 agagtaatttataagagactccaaatatttttgttgttgttgttacataaatggggatca 438
Query: 61 ttgtgcttcattgtacaagggctaggcagagtaaaattatgaagaaattaataggcttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgtgcttcattgtacaagggctaggcagagtaaaattatgaagaaattaataggcttgt 378
Query: 121 gacagagatgaattggcacatataaatggattaaactccattactggcagaactccatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gacagagatgaattggcacatataaatggattaaactccattactggcagaactccatag 318
Query: 181 ccaaagctttaagtgatagcacaaaatgttactgctaggcagtgacgatatgtagacccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccaaagctttaagtgatagcacaaaatgttactgctaggcagtgacgatatgtagacccc 258
Query: 241 tggggatgcatcagataatatatttaggcagattctatacccacctggattcttaga 297
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 257 tggggatgcatcagataatatatttaggtagattctatacccacctggattcttaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
