BAC Information

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BAC

Clone NameMSMg01-072G24
Chromosome1 (Build37)
Map Location 38,523,231 - 38,523,697
singlet/doubletsinglet
Overlap geneAff3
Upstream geneMgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072G24.T7 (MSMg01no072_g24.b1)MSMg01-072G24.TJ (MSMg01no072_g24.g1)
ACCAG295981AG295982
length697695
length of high quality
(start - end)
465 (73 - 537)---
definitionCHROMAT_FILE: MSMg01no072_g24.b1 PHD_FILE: MSMg01no072_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:11 2005CHROMAT_FILE: MSMg01no072_g24.g1 PHD_FILE: MSMg01no072_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCGGAAT
TCTATGATAGACTACCTGTACAAGCAAAATGTTCAGTGTCTACATGCTAG
CAACCTGTCAGAGACTCTTAATGTGTTCTCTTTCCTTGCTGGATATGTAA
TTGTCACAACCCAAGGACATCAAAACATTTCTAGTTGGAGAATATTTTTT
TCCAAGGCAAAATTGAACCATGATTGCGACAGACCTATGGAACAAGTGAT
TCAAACAGCAAGTGCCATAGACTTTGTGGACTTTTTGAAAACCAGCTGTG
GCTCGATGCTTAGGAGCCCTGGAATGGATTTCTTGGACTTTATGTTCCAT
CCATCCAGAACACAGAGGGTTCCAGTCACTTTTTGTTTCTTTTGCGAAAA
TCATGACTTCGCTCTTCATAACCTGTAACTGCCCGTCCTGAGAATACTTA
GGTAGACTGTGAGATCAAGTACTGGTTGATGCTTCAGCTCAAAGCATCTT
TCTTTCCACCTCTCCCATATGCTATCCAGCACTGAGAGTTGGTATCTAAG
GAACTGACCATCTGCCCTCAGCTAAACTTCACAGATGTGCTGCCTGCCTA
AGTCCTTGTCAATACACATGCAATTACAGGACTATGTAGCCATTTAACTT
TGAGGGACTTGGCATTTGTCGCGTAACAGATGACAGCTGTGATGATT
GATGATGTGGGAGGACCCGNGGNNGNGGGNCTTTCCCTACCCGCNAANNA
NAGAAGGATTTTCCGNCACCGGAGGGCGGCNNNAGGCGGCCCACACCGCG
GAGGCCCCCGCAGGGCAGGCACCAAGGCCCGGGGCCGGCGCCCCGGAAGC
CACACAGGCCCNCCAGAGGCCGAGCCCNGGACAGCAGGGGGGAGACGAAG
ACCGAAAGAGCNCCCCAGGGAACCACCACCCCCCCGCNCAGAAACGGCAT
TTTTTCCGNAAGGACAGCCCGTCCCCCCAGAGGCCACCAGCGCCAGGCCA
CAGACCNAAAGCAGTTTTTGTCATTTGCNACAGAGCCGGGCAACCAGCCA
GACACCTGTTGTTGCCCCCCCCCCCCGCGAAGCCTCAGGGAGCCAGCTCA
GTGCTTGGTGACACCGTGGTAATGTACCTCATCAGACTGCCCTGCGCACT
GAATGCAACAATGTATCCAGTTGAGCACCTGTTACAGAACAGGTATTTAA
TCTGGGGAAACACCTCAGGTGCCAGGTGTACAGATAGGATACCAGCGATA
AGGGGCACGGGCGGACTCCGTTTGCAACCACTTCCGCTGTGATTTTCTGA
GGGTCCCCACCTACTCTGTGTGCGACAGAGAACATACTCCCTTCTATATT
TTTTTTTTTTTTTAGAAAGTGCACAAAACGCCCATCGAATGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_g24.b1 MSMg01no072_g24.b1 CHROMAT_FILE:
MSMg01no072_g24.b1 PHD_FILE: MSMg01no072_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:11 2005
         (465 letters)



>mm_chr1_38523031_38523897
          Length = 867

 Score =  830 bits (429), Expect = 0.0
 Identities = 457/467 (97%), Gaps = 2/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaaaatgttcagtgtctacatgctagcaacctgtcagagactcttaatgtgttctctt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 667 agcaaaatgttcagtgtctacatgctagcaacctggcagagactcttaatgtgttctctt 608

                                                                       
Query: 61  tccttgctggatatgtaattgtcacaacccaaggacatcaaaacatttctagttggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tccttgctggatatgtaattgtcacaacccaaggacatcaaaacatttctagttggagaa 548

                                                                       
Query: 121 tatttttttccaaggcaaaattgaaccatgattgcgacagacctatggaacaagtgattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tatttttttccaaggcaaaattgaaccatgattgcgacagacctatggaacaagtgattc 488

                                                                       
Query: 181 aaacagcaagt--gccatagactttgtggactttttgaaaaccagctgtggctcgatgct 238
           ||||||| |||  ||||||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct: 487 aaacagcgagtgcgccatagacttcgtggactttttgaaaaccagctgtcgcttgatgct 428

                                                                       
Query: 239 taggagccctggaatggatttcttggactttatgttccatccatccagaacacagagggt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taggagccctggaatggatttcttggactttatgttccatccatccagaacacagagggt 368

                                                                       
Query: 299 tccagtcactttttgtttcttttgcgaaaatcatgacttcgctcttcataacctgtaact 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tccagtcactttttgtttcttttgcgaaaatcatgacttcgctcttcataacctgtaact 308

                                                                       
Query: 359 gcccgtcctgagaatacttaggtagactgtgagatcaagtactggttgatgcttcagctc 418
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 307 gcccatcctgagaatacttaggtagaatgtgagatcaagtactggttgatgcttcagctc 248

                                                          
Query: 419 aaagcatctttctttccacctctcccatatgctatccagcactgaga 465
           ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaagcgtctttctttccacctctcccatatgctatccagcactgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 867
Length adjustment: 10
Effective length of query: 455
Effective length of database: 857
Effective search space:   389935
Effective search space used:   389935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)