BAC Information

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BAC

Clone NameMSMg01-072M14
Chromosome1 (Build37)
Map Location 136,602,069 - 136,602,526
singlet/doubletsinglet
Overlap geneSyt2
Upstream geneAtp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418
Downstream genePpp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072M14.T7 (MSMg01no072_m14.b1)MSMg01-072M14.TJ (MSMg01no072_m14.g1)
ACCAG296242AG296243
length695694
length of high quality
(start - end)
584 (43 - 626)458 (70 - 527)
definitionCHROMAT_FILE: MSMg01no072_m14.b1 PHD_FILE: MSMg01no072_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:38 2005CHROMAT_FILE: MSMg01no072_m14.g1 PHD_FILE: MSMg01no072_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATAGTCCACAGGACCGCGGAATT
CATGAAATTCTTCCACAATGGATGGATCTGGAGGATATCATCCTGAGCGA
GGTAACCCAATCACAAAAGAACACACATGATATGCACTCACTTATAAGTG
GATATTAGCCCAGAAACTCAGAATACCAAAGATACAATTTGTAAAACACA
TGAAACTCAAGAAGAAGGAAGACCAAAGTGTAGATACTTTGATCCTTCTT
AGAAGGGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCTG
AGCAGAGACTAAAGGCATGACTATCCAGAGACTGCTCCACCTGGGGATCC
ATCCCACAAACAACCACAGAACCTAGATACTATTGCAGATGCCAACAAGA
GCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGT
GCCTGACTAATACAGAAGTGTATGCTCACAGTCATCCATTAGACAGAGCA
CAGGGTCCTCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGATGGGG
TTTGCAGCCCCCTAGAAGGAACAACAATATGAACTAACCAGTAGCCCCAG
AGCTCCTGGGGACTAAACCACCAATCTAAGCACACGGAAAGACTCATGGC
TCTAGCTGCATATGTAGCTGAGGATGGCCTAGTTGGTCATCAATG
ATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTGGGCCCTGACTCTGGAGCCAGGAGCAAG
GCAAGTCCTTGGCCTTCTCTGAGCCTCTGTTTTCTCAGCTGTGAAGCCTG
GTGCTTATGGACCTGGGGACTGCTGCCCTAGTGGCTCAGTGACTAGGATC
GGTGGAAGGAGGGACAACATGATAGCACTGGAGATGGTCACAGTGGCAAC
TGCAGGAGTTAACACTCTTTGCAGAAATCTTAATTTCTGTGTCTTTCTTT
GGGAGGGAAGCACGGGAACTATTGCTTTGTCTGGACAGTCGGGAAGTGAG
GAGTGGACCCGGCCAGTGTGTCGTCACCGCTCCCCTTATCCCTCTCCCCT
TGCTCAGGGGAAGCCTAGGGATGCTAATTTCCAGCAAGGTTTCCTCTGCT
CTGCGTGCAGCAATCCCAAGCTACTTTGCAGGGACCCAGCTGTGGTGTGT
TCCTGAGGAGCCTCATGTGCCTCCGACAGGAAGGAGGACACCTGGGTAGC
AACAGGGAGAATGCAGAGTGGGTTTCAGGGTACCCCTTCTGTGAATGATC
CCCATCCCTCATCCCCCATCCCTCATTCCATCCAGGAGCTCTGAAAACTA
AAGCAGGCGTGTGCTGCTTATATGCCAGCATCGAGCATTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_m14.g1 MSMg01no072_m14.g1 CHROMAT_FILE:
MSMg01no072_m14.g1 PHD_FILE: MSMg01no072_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:38 2005
         (458 letters)



>mm_chr1_136601869_136602726
          Length = 858

 Score =  878 bits (454), Expect = 0.0
 Identities = 457/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgggccctgactctggagccaggagcaaggcaagtccttggccttctctgagcctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgggccctgactctggagccaggagcaaggcaagtccttggccttctctgagcctctg 260

                                                                       
Query: 61  ttttctcagctgtgaagcctggtgcttatggacctggggactgctgccctagtggctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttctcagctgtgaagcctggtgcttatggacctggggactgctgccctagtggctcag 320

                                                                       
Query: 121 tgactaggatcggtggaaggagggacaacatgatagcactggagatggtcacagtggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactaggatcggtggaaggagggacaacatgatagcactggagatggtcacagtggcaa 380

                                                                       
Query: 181 ctgcaggagttaacactctttgcagaaatcttaatttctgtgtctttctttgggagggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcaggagttaacactctttgcagaaatcttaatttctgtgtctttctttgggagggaa 440

                                                                       
Query: 241 gcacgggaactattgctttgtctggacagtcgggaagtgaggagtggacccggccagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacgggaactattgctttgtctggacagtcgggaagtgaggagtggacccggccagtgt 500

                                                                       
Query: 301 gtcgtcaccgctccccttatccctctccccttgctcaggggaagcctagggatgctaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcgtcaccgctccccttatccctctccccttgctcaggggaagcctagggatgctaatt 560

                                                                       
Query: 361 tccagcaaggtttcctctgctctgcgtgcagcaatcccaagctactttgcagggacccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccagcaaggtttcctctgctctgcgtgcagcaatcccaagctactttgcagggacccag 620

                                                 
Query: 421 ctgtggtgtgttcctgaggagcctcatgtgcctccgac 458
           |||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ctgtggtgtgttcctgaggagcctcaggtgcctccgac 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)