Query= MSMg01no072_n24.b1 MSMg01no072_n24.b1 CHROMAT_FILE:
MSMg01no072_n24.b1 PHD_FILE: MSMg01no072_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:46 2005
(511 letters)
>mm_chr1_138659319_138660228
Length = 910
Score = 824 bits (426), Expect = 0.0
Identities = 461/478 (96%), Gaps = 11/478 (2%)
Strand = Plus / Plus
Query: 5 gaattccttgccatgttgctagattaaaattcctctacacttgatggctttaaactacaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattccttgccatgttgctagattaaaattcctctacacttgatggctttaaactacaa 255
Query: 65 gtgtgccttc---------agacaagagggcctcatgaatgttgccactaacgcaggcag 115
|||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 256 gtgtgccttctgagccttcagacaagagggcctcatgaatgttgccactaacacaggcag 315
Query: 116 ttcagtagcagaagttggaagctggttcatgggaggctgggggtattgatcacagctcat 175
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttcagtaccagaagttggaagctggttcatgggaggctgggggtattgatcacagctcat 375
Query: 176 tggctttatacttaaacttttgttattcacctgacatttttagagatgctttcctgtgtg 235
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tggctttataattaaacttttgttattcacctgacatttttagagatgctttcctgtgtg 435
Query: 236 agactggcagtgattcatcaaggactctattctgattgtctatactaatgtagatattat 295
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 agactggcagtgattcatcaaggactctattctgattgtctataaaaatgtagatattat 495
Query: 296 atactgttatgagttcctgacactggtttttttagactctcagttacagatgtgtagata 355
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 atactgttatgagttcctgacactggtttttt-agactctcagttacagatgtgtagata 554
Query: 356 tcatgtcaactttcttgctaatgctaactttattgtttgtatatgtaactaatgtctcat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcatgtcaactttcttgctaatgctaactttattgtttgtatatgtaactaatgtctcat 614
Query: 416 tcttcctttaaaaaaa-ctttttcttccttccttccttccttccttccttccttcctt 472
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 615 tcttcctttaaaaaaaactttttctcccttccttccttccttccttccttccttcctt 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 910
Length adjustment: 10
Effective length of query: 501
Effective length of database: 900
Effective search space: 450900
Effective search space used: 450900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_n24.g1 MSMg01no072_n24.g1 CHROMAT_FILE:
MSMg01no072_n24.g1 PHD_FILE: MSMg01no072_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:46 2005
(445 letters)
>mm_chr1_138774279_138775123
Length = 845
Score = 735 bits (380), Expect = 0.0
Identities = 424/446 (95%), Gaps = 14/446 (3%)
Strand = Plus / Minus
Query: 1 tgtaagtgaaggctccattgaggttaaaattaatgcttttttcccccgcc-catatacag 59
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 792 tgtaagtgaaggctccattgaagttaaaattaatgcttttttcccccgccacatatacag 733
Query: 60 gcttcaagcacatagctatgtacatcgtacctacttctgttccaagtaaatgaatgacta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gcttcaagcacatagctatgtacatcgtacctacttctgttccaagtaaatgaatgacta 673
Query: 120 atgactctcaggcccggtagggaagactagttaaggaaactagttaaggacactctggca 179
|||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 672 atgactctcaggcccgttagggaaga-----t--------tagttaaggacactctggca 626
Query: 180 gttcttccttggcgctaatggaatactacatccataagacacatggaggatatcccatcg 239
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 625 gttcttccttggcgctaatggaatactacatccataagacacatggagaataccccatcg 566
Query: 240 tatagccacaccctgtagctcctcacgtcatcccaaattatagagccgacaacctaagag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatagccacaccctgtagctcctcacgtcatcccaaattatagagccgacaacctaagag 506
Query: 300 acaccttaggtgagataggtctggtcatccctgggaacaacacaggtggttcatggagag 359
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 505 acaccttaggtgagataggtctgctcatccctgggaacaacacaggtggtgcatggagag 446
Query: 360 aagccactgtgcacccgttgtctttcctggctgctgctaaagtcctctctggagcatcaa 419
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 aagccactgtgcacccgttgcctttcctggctgctgctgaagtcctctctggagcatcaa 386
Query: 420 cagaggtgcagaggggacaagaacct 445
||||||||||||||||||||||||||
Sbjct: 385 cagaggtgcagaggggacaagaacct 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
