BAC Information

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BAC

Clone NameMSMg01-073F14
Chromosome1 (Build37)
Map Location 189,762,899 - 189,763,185
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073F14.T7 (MSMg01no073_f14.b1)MSMg01-073F14.TJ (MSMg01no073_f14.g1)
ACCAG296670AG296671
length7191,436
length of high quality
(start - end)
287 (64 - 350)---
definitionCHROMAT_FILE: MSMg01no073_f14.b1 PHD_FILE: MSMg01no073_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:23 2005CHROMAT_FILE: MSMg01no073_f14.g1 PHD_FILE: MSMg01no073_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAAATTTGCGGCGCTAAACGACTCCTATTCCGAGAGGACCGCGGAATTC
AGCTGTTCCCCAGTAGGGACAGTTGACTCTGGCCTGAAGCTTGAGTACGA
TTGAACTTCCTGGGGAGTCTGCTGAGAGTGGGGGAGGGGAAGCAAGCCTC
AGCATCTGTAGCAGGGACACCAGGTAAGGCAGCCAGGCCATGAAAACAAG
GCCAACTGATAACCCTCTGCTGGAGCAGGAGAAGGGGTTTCTTCAAAAAA
TAAAATAATAGTAAAATAAATAATAAAAATCACTGTTTATGGTTTTGCTA
ATTTTTAACACACTTTTATGTAAAGTTTATATAAGTTAAACATTAATGTA
TGTGTCTAGAAGTGGCATCTAACCCTCTGTGGTGGCATTCTTCACATGTT
TGGTGTCAGATAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGAGACAGAGA
GAGAGAGAGATACAGAGAGAGAGCCTTCCCCCCGTCTTCATTTATACTGT
TCCTTTCCTGCTCTACTATCCTTTCAGTTCTTTTCTCCGCCCTTCTCATT
ACCTCATTTCGCCCTCCCTCTTCCCTCCCTCCCCTCATATTTGACCTTTT
CTTATTTACCCCCTTCCCCTTTTCTTTCTCTTCTTCCCTTTTCCCCTTTT
CTTTCTCCCCACTTCTTCTTTCCCTCCTTCTCCTTTTCTTCCCCTCATTC
ATATTCCCCACTTTATTTG
GTTTGTGCTTGTGTGTCTGTTCTTTTTTCTTTTCGTGTCATTTTCTTNCC
TACTTTTTTTACCTGCGTTAATCCTCCTTCCCTATCTACCGTAATGACTA
AGCGGAGCGAAGGATTATGGGTTGATANCGCGCACGTGTTCGCTCNGAAA
GTCAGTAGGCGCGCACCTTCACGTCGTCGCGGAACGCTCGGTTGGACTAT
TNTAAACGCGTCTATAATTCGTTCACATTAGCGTGACACGTGTCATGTAC
GGATCTTACAGTATGATTCTGAGCGTGCGCTTGCTGCAGTTTTGCGTCGA
AGTTGCTGTCCCTTGCGTCTTCGGTAGCGCGGTCCTTGGTTACTACAGAC
TACAGATAACGCGTATATAGATAATAAGCTCACACGCGACTCGCAAATAA
TAAGACACGTGACATGGATGTAGAAGGTGCACGTCCACACGTCGCGATTG
GTGTTCGTCCACGACGTCTGNTTCAGATAGCATATTATTGTATTCAGCAT
ATTACCACCTTCACTACACCCTTATATAGGTATTACGCACCGACGTCTAC
GGTCGCGCCGAGATCGTAGATATTATACGGGACACATATTCTGTTCGAGT
ATTCCGCGGTGAACGACACCGATATATTCCCTGTATTCTTATGAGCATTT
TGCTGACCGGCGCATATCCCATGCATATAGCCATTACTACCANTTGGATA
ACATTAATATTATTCGATNTGTATGCACGCACCACGCTCTACGCGTAACA
ATACGTGTGCACATACCGTACCAGATTCTGATACGTATTACGATGTACTG
TAACGCATATGCTGTGGTGTCGCACCACCACATCACCAACATCACACATA
TCATATACGTACTCATCTCGCAGCACGCTCTACGCACTGTTGTACAGTAT
ATTACGCACTCCCAGTTGTGCATACTTACTCACATACCAGAATCGCNCAT
ACGCTTGATTACGTATAACCGTGTATCCCACGATTGCGCCGTGCGCCAAT
ATATATACTTTCTCATACACACACTGCTATTCAATGTGTGTAGGTACACA
CAAGCTACCGGGAGTCACCATATTTGTAACACGCTCAATATTGGTCACGC
ACACCTCTCGACAAGCTGTGCATTATANAGCATTACGTCGTAGTAACACC
GTGTGTTGCGATAAATCATGAAACCATNCACACCACTTATTCGATTGTGT
CTCATGTGCATTCCGACGTTATAACCCATTGCGCCCCGGCTGTGTGGACA
GTGTCCACTGTATTACCAGTACGAGAGCGAGTNTGCAGATATCGACGAGT
GTGTCGTACGGTATTTACGCATNCGCAGCGCATACTCGCTCTCCGTTTAA
ATCTATTATATGTCTCTCTACCTNCGCTCCGCGTATATGCTATTACCCAG
CTACANCACCGCATTATACACGCCTACACCNGCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_f14.b1 MSMg01no073_f14.b1 CHROMAT_FILE:
MSMg01no073_f14.b1 PHD_FILE: MSMg01no073_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:23 2005
         (287 letters)



>mm_chr1_189762805_189763491
          Length = 687

 Score =  478 bits (247), Expect = e-139
 Identities = 277/287 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagggacagttgactctggcctgaagcttgagtacgattgaacttcctggggagtctgct 60
           ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct: 381 tagggacagttgactctggcctggagcttgagtaggactgaacttcctggggagtctgct 322

                                                                       
Query: 61  gagagtgggggaggggaagcaagcctcagcatctgtagcagggacaccaggtaaggcagc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gagagtgggggaggggaagcaagcctcagcatctgtagcagggacaccaggtaatgcagc 262

                                                                       
Query: 121 caggccatgaaaacaaggccaactgataaccctctgctggagcaggagaaggggtttctt 180
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 261 caggccatgaaaacaaggccaactgacaaccctctgctggagcaggagaaggagtttctt 202

                                                                       
Query: 181 caaaaaataaaataatagtaaaataaataataaaaatcactgtttatggttttgctaatt 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 caaaaaataaaataatagtaaaataaatattaaaaatcactgtttatggttttgctaatt 142

                                                          
Query: 241 tttaacacacttttatgtaaagtttatataagttaaacattaatgta 287
           ||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 141 tttaacacacacatatgtaaagtttatataagttaaacattaatgta 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)