Query= MSMg01no073_f17.b1 MSMg01no073_f17.b1 CHROMAT_FILE:
MSMg01no073_f17.b1 PHD_FILE: MSMg01no073_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:23 2005
(251 letters)
>mm_chr1_39747252_39747902
Length = 651
Score = 456 bits (236), Expect = e-133
Identities = 245/248 (98%)
Strand = Plus / Minus
Query: 1 gtcctggagaaatcatttcaagtagaattgtgtgctctggccctagcgggtccctcttct 60
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 591 gtcccggagaaatcatttcaagtagaattgtgtgctctggccctagtgggtccctcttct 532
Query: 61 gccagtcagcactgtgaggagggcccgagaccctttacccttccgggtttttttgttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gccagtcagcactgtgaggagggcccgagaccctttacccttccgggtttttttgttttg 472
Query: 121 ttttgtttttgtttttttgtttttttgggtttttttagcctgaaatttgtcattcagaaa 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 471 ttttgtttttgtttttttgtttttttgggtttttttagtctgaaatttgtcattcagaaa 412
Query: 181 tgaagtcagtaacctgcattttcctgtcagcccagggttcctgacaggacaggactcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgaagtcagtaacctgcattttcctgtcagcccagggttcctgacaggacaggactcaat 352
Query: 241 tttatttc 248
||||||||
Sbjct: 351 tttatttc 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no073_f17.g1 MSMg01no073_f17.g1 CHROMAT_FILE:
MSMg01no073_f17.g1 PHD_FILE: MSMg01no073_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:23 2005
(273 letters)
>mm_chr1_39585064_39585735
Length = 672
Score = 491 bits (254), Expect = e-143
Identities = 269/274 (98%), Gaps = 3/274 (1%)
Strand = Plus / Plus
Query: 1 cacaaagaagtagggattttgaaaaaagaacaattagtcaaattaaaaaaaaaatccagc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 201 cacaaagaagtagggattttgaaaaaagaacaattagtcaaatttaaaaaaaa-tccagc 259
Query: 61 tttaacaaagttcgatctgatctgtgaatggggacttgaaatcagccattcaggcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttaacaaagttcgatctgatctgtgaatggggacttgaaatcagccattcaggcacaaa 319
Query: 121 gtgggttgggaattgttgttattctaatgttgattgaactttgtctgaatgtgaacaaag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 gtgggttgggaattgttgttattctaatgttgattgaactttgtctgaatgtgaaccaag 379
Query: 181 ttaaagagcaccatgaaaagaagaagtaatgtgaaggttgtctttagaggaaaagatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaaagagcaccatgaaaagaagaagtaatgtgaaggttgtctttagaggaaaagatata 439
Query: 241 cttgagcattta-tcctttcatctggctctcgac 273
|||||||||||| || ||||||||||||||||||
Sbjct: 440 cttgagcatttagtc-tttcatctggctctcgac 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 672
Length adjustment: 9
Effective length of query: 264
Effective length of database: 663
Effective search space: 175032
Effective search space used: 175032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
