BAC Information

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BAC

Clone NameMSMg01-073H11
Chromosome1 (Build37)
Map Location 20,676,266 - 20,676,687
singlet/doubletsinglet
Overlap genenone
Upstream genePkhd1
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073H11.T7 (MSMg01no073_h11.b1)MSMg01-073H11.TJ (MSMg01no073_h11.g1)
ACCAG296759AG296760
length704709
length of high quality
(start - end)
422 (63 - 484)229 (75 - 303)
definitionCHROMAT_FILE: MSMg01no073_h11.b1 PHD_FILE: MSMg01no073_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:32 2005CHROMAT_FILE: MSMg01no073_h11.g1 PHD_FILE: MSMg01no073_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AGAATTTCAATGGCCGGCTAGTGTGACTCATACAGTGGGAACCTATGAGA
GACCTTTCCTCAGACATGGTAGTTTGTCTTCCAACCTTCATATATGCACA
GTGGCATGCATGCCCCCATACTCTTACACAAAAGCATGTATCACATCATA
TATACACAATGCAATACATGCACATACAATTTTAAAAAGGAAAAAAGAAT
TTTCAGTATAGTGATCCATATCCCTAACCCAACACTTGGGAGGCAGAAAC
AGGAGATATATATATAAATGCATAGATGCAATCTTTGATGAAGTGTGGGT
AATGGAATTTTCCTCTTCCCGTGACCGTCTGCAGGGCATTTAGTCTCAAA
CTATTCCCATCAATTCCTCATGGGCAAAAGTCCTTTCAGCATTTTTATGC
AATTATTTCCATCCTTATAGGGCTGACTCTTGGCAGCCACTGGGGTTACC
CATAGTCTCTGTTCTACCAGAGCGATCCCATGCCCTGTCGGTTAGAAGCA
TCATGGCGATGCTGCTATGCACGAATACTCATGAAGCGACACACTCTGAC
AGTAAAACCACATGCCTCTAATGCTGTCTCTAACCTAGCATTCCGCCCTA
TAAAAGGCGTTGTGTTCAAGAACAACGTCAGTATCTTGCTTACACATTCC
CAGT
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT
ATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC
CCAATCTGCTGGTGGTCTCTTTGTCTTATTGACGGTGATCGCCCAATTCT
TTACATCTATTCCTCAAACACAAGGGCTCCCAAGTTTGTAAAACAAACAA
ACAAACAAACAAACAAGCAGACATGCAAACACTACTTACCCTCACACACT
GATAATGGAAAAATTCATTACCCCATTCTCACCAATAGTCATTGAGGTAA
AAACTAAACTAACAAACAACTATTGGAACTAACAGATATTATATACCAAA
GAGACCTAATAGATATTTACAATGCATTTCAGGCAAAAACCATAGAATAC
AGCTTCTCAGCAGTTCATGAGAATTTCTCCAATACTGACCACACGTGCAG
ATACTATGCCTCAACAGACACTATGTCTCATCAGATACTATAAAATTGAA
TTATTGCCGCTATCTCTGTCCAATTACCATGTATTATAGCTGGATATCCA
TAAGAAATAACACTTAACGCTTATATACTCTTGGAAATTGAACAACTCTC
TATTGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_h11.b1 MSMg01no073_h11.b1 CHROMAT_FILE:
MSMg01no073_h11.b1 PHD_FILE: MSMg01no073_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:32 2005
         (422 letters)



>mm_chr1_20676066_20676887
          Length = 822

 Score =  723 bits (374), Expect = 0.0
 Identities = 410/422 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccggctagtgtgactcatacagtgggaacctatgagagacctttcctcagacatggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gccggctagtgtgactcatacagtgggaacctatgagagacctttcctcagacatggtag 563

                                                                       
Query: 61  tttgtcttccaaccttcatatatgcacagtggcatgcatgcccccatactcttacacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttgtcttccaaccttcatatatgcacagtggcatgcatgcccccatactcttacacaaa 503

                                                                       
Query: 121 agcatgtatcacatcatatatacacaatgcaatacatgcacatacaattttaaaaaggaa 180
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 502 agcatgtatcacatcatatatacacaacgcaatacatgcacacacaattttaaaaaggaa 443

                                                                       
Query: 181 aaaagaattttcagtatagtgatccatatccctaacccaacacttgggaggcagaaacag 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 aaaagaattttcagtatggtgatccatatccctaacccaacacttgggaggtagaaacag 383

                                                                       
Query: 241 gagatatatatataaatgcatagatgcaatctttgatgaagtgtgggtaatggaattttc 300
           | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 382 gggatatatatataaattcatagatgcaatctttgatgaagtgtgtgtaatggaattttc 323

                                                                       
Query: 301 ctcttcccgtgaccgtctgcagggcatttagtctcaaactattcccatcaattcctcatg 360
           ||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 322 ctcttcccgtgtccgtctgcagggtagttagtctcaaactatttccatcaattcctcatg 263

                                                                       
Query: 361 ggcaaaagtcctttcagcatttttatgcaattatttccatccttatagggctgactcttg 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 262 ggcaaaagtcctttcagcatttttatgcaattattttcatccttatagggctgactcttg 203

             
Query: 421 gc 422
           ||
Sbjct: 202 gc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)