BAC Information

Click to search

BAC

Clone NameMSMg01-073M05
Chromosome1 (Build37)
Map Location 65,941,747 - 66,109,275
singlet/doubletdoublet
Overlap geneCrygf, LOC667781
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneEG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073M05.T7 (MSMg01no073_m05.b1)MSMg01-073M05.TJ (MSMg01no073_m05.g1)
ACCAG296982AG296983
length710710
length of high quality
(start - end)		603 (47 - 649)634 (77 - 710)
definitionCHROMAT_FILE: MSMg01no073_m05.b1 PHD_FILE: MSMg01no073_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:56 2005CHROMAT_FILE: MSMg01no073_m05.g1 PHD_FILE: MSMg01no073_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,108,707 - 66,109,275)(65,941,747 - 65,942,380)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCATAAAGCAGAAAAATGATTAAGTTGGACAATTTTAAGTGAGG
AGCCATCTGTATCCATCCTCATCTTAGTTTGATGTACATGCCAAAATATG
TGCATAATATACAATTCTACACATGTAGACGTATTTCCATATGCATGTCA
TCTGAATCTATATCCAACTATTTAGATATGTACACACACACACACACACA
CACACACACACACACACACACACACACACAGGTATCTACAAGCATAGGAT
TGTCTTTGTATGTGTGACTCATTCTTTTATCTAACTAACATCACTCAAAT
GTTTGAGTAAACTGTTTCAAAGTGTTCATAGATTCCATAACCCACGTGCA
ATTTGGATTGTTAGGTAAAATTATACATTGCTAAACCCATCTTTAGATCT
TCCCATCTTTCCATCTCCATGGTAAGTGATGTCTCTGCTGCATTGTCTCT
TTATGCTAGGGCCATGGCACTATGAAGATTTCTAGGCAGTGGCATTTCAT
GAGGAACTTCACACCACATTATGACCTTGACATAAAAATGGAAAAGAATG
TAGGAACTGTTAAGTTTTGTATTGTCAAATCTTTTTATAGCAATGGAAAA
CATAACCATTTGGGTATTTTTCTTATGACTTTTAGCAAGAATAATAATTG
TGAAAGTCAT

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGAAAACAGAAGTTTTAAAA
CTCTTGACAGGGGAGTAACATTTTATTTCTATTTTTATGTATTGAAATAG
ACATGGAAATAAAGTGGTTGTAGCTATTTTATTTAAGAAACTGGGACAAG
ACAGCAATAATTCTTAATAACAGAAGTACAATTATAACCAGACAAGTGTC
AATTTTGGCAGGGGCATATTATATACTATGATAGATGCATATAGATGAAA
TCTTAAGAAGTGGTATTATTTTCAAACTTGGTGGTACTTAGCAAAACATT
TTAAGTGAAAAGAATCAACAAAAAAGCTATGCATTTCAATTTTTTGGTAT
GAACTATTTCATCAGGCTGTCAATTCGGATCCAAGGCGCACTTAGGAGTG
AAATCATGCCTGGTACTGGAAGCCTATCCAACTCCACCCAGTAGTGAGGT
CACAGATCCTAAAGAAGAACCTACCAATGCAACTTTCCTAAACTAATACA
ATTCCTGACTGCACTCTAAATACTTGTCCTTATACCCGTCAAGAAGAGTA
AATCTTACCCCTAACCAAAGAAGTTTCTCTTTGTACTAGACAGAGATCAG
TACAAAAAGCCAGAACTGTTACAATGTAGAATATAGCTAATCATGGGGTA
CTGAGCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_m05.b1 MSMg01no073_m05.b1 CHROMAT_FILE:
MSMg01no073_m05.b1 PHD_FILE: MSMg01no073_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:56 2005
         (603 letters)



>mm_chr1_66108273_66109275
          Length = 1003

 Score = 1100 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Minus

                                                                        
Query: 35   ttggacaattttaagtgaggagccatctgtatccatcctcatcttagtttgatgtacatg 94
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 ttggacaattttaagtgaggagccatctgtatccatcctcatcttagtttgatgtacatg 944

                                                                        
Query: 95   ccaaaatatgtgcataatatacaattctacacatgtagacgtatttccatatgcatgtca 154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  ccaaaatatgtgcataatatacaattctacacatgtagacgtatttccatatgcatgtca 884

                                                                        
Query: 155  tctgaatctatatccaactatttagatatgtacacacacacacacacacacacacacaca 214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  tctgaatctatatccaactatttagatatgtacacacacacacacacacacacacacaca 824

                                                                        
Query: 215  cacacacacacacacacacaggtatctacaagcataggattgtctttgtatgtgtgactc 274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  cacacacacacacacacacaggtatctacaagcataggattgtctttgtatgtgtgactc 764

                                                                        
Query: 275  attcttttatctaactaacatcactcaaatgtttgagtaaactgtttcaaagtgttcata 334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  attcttttatctaactaacatcactcaaatgtttgagtaaactgtttcaaagtgttcata 704

                                                                        
Query: 335  gattccataacccacgtgcaatttggattgttaggtaaaattatacattgctaaacccat 394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  gattccataacccacgtgcaatttggattgttaggtaaaattatacattgctaaacccat 644

                                                                        
Query: 395  ctttagatcttcccatctttccatctccatggtaagtgatgtctctgctgcattgtctct 454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  ctttagatcttcccatctttccatctccatggtaagtgatgtctctgctgcattgtctct 584

                                                                        
Query: 455  ttatgctagggccatggcactatgaagatttctaggcagtggcatttcatgaggaacttc 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583  ttatgctagggccatggcactatgaagatttctaggcagtggcatttcatgaggaacttc 524

                                                                        
Query: 515  acaccacattatgaccttgacataaaaatggaaaagaatgtaggaactgttaagttttgt 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523  acaccacattatgaccttgacataaaaatggaaaagaatgtaggaactgttaagttttgt 464

                                         
Query: 575  attgtcaaatctttttatagcaatggaaa 603
            |||||||||||||||||||||||||||||
Sbjct: 463  attgtcaaatctttttatagcaatggaaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 22
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no073_m05.g1 MSMg01no073_m05.g1 CHROMAT_FILE:
MSMg01no073_m05.g1 PHD_FILE: MSMg01no073_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:56 2005
         (634 letters)



>mm_chr1_65941547_65942580
          Length = 1034

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttgaaaacagaagttttaaaactcttgacaggggagtaacattttatttctattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttgaaaacagaagttttaaaactcttgacaggggagtaacattttatttctattttt 260

                                                                       
Query: 61  atgtattgaaatagacatggaaataaagtggttgtagctattttatttaagaaactggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtattgaaatagacatggaaataaagtggttgtagctattttatttaagaaactggga 320

                                                                       
Query: 121 caagacagcaataattcttaataacagaagtacaattataaccagacaagtgtcaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagacagcaataattcttaataacagaagtacaattataaccagacaagtgtcaatttt 380

                                                                       
Query: 181 ggcaggggcatattatatactatgatagatgcatatagatgaaatcttaagaagtggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaggggcatattatatactatgatagatgcatatagatgaaatcttaagaagtggtat 440

                                                                       
Query: 241 tattttcaaacttggtggtacttagcaaaacattttaagtgaaaagaatcaacaaaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttcaaacttggtggtacttagcaaaacattttaagtgaaaagaatcaacaaaaaag 500

                                                                       
Query: 301 ctatgcatttcaattttttggtatgaactatttcatcaggctgtcaattcggatccaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatgcatttcaattttttggtatgaactatttcatcaggctgtcaattcggatccaagg 560

                                                                       
Query: 361 cgcacttaggagtgaaatcatgcctggtactggaagcctatccaactccacccagtagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgcacttaggagtgaaatcatgcctggtactggaagcctatccaactccacccagtagtg 620

                                                                       
Query: 421 aggtcacagatcctaaagaagaacctaccaatgcaactttcctaaactaatacaattcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtcacagatcctaaagaagaacctaccaatgcaactttcctaaactaatacaattcct 680

                                                                       
Query: 481 gactgcactctaaatacttgtccttatacccgtcaagaagagtaaatcttacccctaacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gactgcactctaaatacttgtccttatacccgtcaagaagagtaaatcttacccctaacc 740

                                                                       
Query: 541 aaagaagtttctctttgtactagacagagatcagtacaaaaagccagaactgttacaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagaagtttctctttgtactagacagagatcagtacaaaaagccagaactgttacaatg 800

                                             
Query: 601 tagaatatagctaatcatggggtactgagcccca 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 tagaatatagctaatcatggggtactgagcccca 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |