TATTTGCGGCGCTATACGACTCCTATAGGGCGAGATCCGCGGAATTCAGA
GGGCACCTCCGTCTGCCTTACAGATTAAATACAACAGAAACCACACCTAA
CTGGAAATAGTTCTTTACCCTTATAGGTTAGGTTAGCTCATATATTTGAC
AAGTGTGTAGTTCTCACTATTAATCAGAGAAGCTTCTTCTTAGAGCAGAA
GATACTATTACAGAAAATGACTACTGTCCAAAACACAGAGAATAAGATTA
TGTGAATACCAACACCCAATTGCATCTACAATACAAATGGTACACTTAAG
TATCAGGGAATATTATGGAAGACTGGGGGTAAAGATGGTAAGAACAGAGG
ACAGACATGTGTTGTAACACTCTGCCCTTTAAATGAAGGAAAATACACAT
ATAAAATCCCAACAATATGCTTAACTAAACAAGACCGGCATAAAAATACC
ATCAATTGCTATGCCAATGTGAATGAAGAAAATCTCCTAAATCCCCATCT
CTTGATGAACAGTTGTATTGAATTAATAATGACTGCTAAGAGTGGGAGGT
TTAATCTTTTTGAGGGATCAATGCCATAATAGGTTATCTCATACTAAGTG
GTCAGTACTAAATATGGACATATATAAGTAACAGAAGATGGACTCAGCAG
GGTGTACTCATATATAAATATAAGTGTGTCTGTAGGCATATGTCTAACCA
TTATTATTGAAAAATGAGGAGATCATGAAC

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGACTAGCTCTAGGAAATGGTATGTATG
CAAAACTTCTGTCTTTGGAACAATCTTGGTACATTGGCAAAAGTAAGATG
TTGTCACCATCAATAAATATTGGTTTCAAAGAAGATTACACCAGCATTTG
CCTACAAATACTGGCTACTATTGCTGGTCCCAATTTACACTGTCTTTGGA
AAGAGCATATTTTAATTTACAACTTAAAAGACATGTTTATATTTTACATA
TAACTTTATTTTGTATGTATCAGGAATACTATATCTAATTTCACTAAACT
GTTTCAAAAATATGATTGATGCACAGATTTATTATTGTCTGTAGTTCTTT
AGTTTCAGGGAAACAATTACAGTTGTGAATGTGCAGCAGAATTGTCAAAG
TTACCTAACTTGATCAATCAAAATGCAAATGTTGTGGTTCATATCCATAA
CCCTTGCCTTCAGTATGTAAAACAATCAAATTGGATATAGGTTTCTGCCC
AGGCTGATTTACATAGCAAGTTATAATCCAGCCACAGCAAAACTCTGACT
TCAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAA
TCACCCAAAAAACAAGATTGCTTAATTTGTCAAATTTCTCAAATAAATAA
ATTATATATCCATTAATTTAATTTAATTTTAACAT

Query= MSMg01no073_o19.g1 MSMg01no073_o19.g1 CHROMAT_FILE:
MSMg01no073_o19.g1 PHD_FILE: MSMg01no073_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:08 2005
         (556 letters)



>mm_chr1_111341888_111342841
          Length = 954

 Score =  951 bits (492), Expect = 0.0
 Identities = 540/556 (97%), Gaps = 2/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgactagctctaggaaatggtatgtatgcaaaacttctgtctttggaacaatcttggt 60
           |||| |||||||||||||||||||| ||||  ||||||||||||||||||||||||||||
Sbjct: 201 tgtgcctagctctaggaaatggtatatatgtgaaacttctgtctttggaacaatcttggt 260

                                                                       
Query: 61  acattggcaaaagtaagatgttgtcaccatcaataaatattggtttcaaagaagattaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattggcaaaagtaagatgttgtcaccatcaataaatattggtttcaaagaagattaca 320

                                                                       
Query: 121 ccagcatttgcctacaaatactggctactattgctggtcccaatttacactgtctttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ccagcatttgcctacaaatactggctactattgctggtcccaatttacactgt-tttgga 379

                                                                       
Query: 181 aagagcatattttaatttacaacttaaaagacatgtttatattttacatataactttatt 240
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 380 aagagcatattttaatttacaactt-aaagacatgtttatattttgcatataactttatt 438

                                                                       
Query: 241 ttgtatgtatcaggaatactatatctaatttcactaaactgtttcaaaaatatgattgat 300
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 439 ttgtatgtatcaggaatactatatccaatttcactaaactgtttgaaaaatatgattgat 498

                                                                       
Query: 301 gcacagatttattattgtctgtagttctttagtttcagggaaacaattacagttgtgaat 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 gcacagatttattattgtctgtagttctttagtatcagggaaacaattacagttgtgaat 558

                                                                       
Query: 361 gtgcagcagaattgtcaaagttacctaacttgatcaatcaaaatgcaaatgttgtggttc 420
           || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 559 gtacagcagaattgtcaaagttacctaagttgatcaatcaaaatgcaaatgttatggttc 618

                                                                       
Query: 421 atatccataacccttgccttcagtatgtaaaacaatcaaattggatataggtttctgccc 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 atatccataacccttgccttcagtatgtaaaacaatcaagttggatataggtttctgccc 678

                                                                       
Query: 481 aggctgatttacatagcaagttataatccagccacagcaaaactctgacttcaaaacaaa 540
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aggtttatttacatagcaagttataatccagccacagcaaaactctgacttcaaaacaaa 738

                           
Query: 541 acaaaacaaaacaaaa 556
           ||||||||||||||||
Sbjct: 739 acaaaacaaaacaaaa 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 954
Length adjustment: 10
Effective length of query: 546
Effective length of database: 944
Effective search space:   515424
Effective search space used:   515424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)