Query= MSMg01no074_l24.b1 MSMg01no074_l24.b1 CHROMAT_FILE:
MSMg01no074_l24.b1 PHD_FILE: MSMg01no074_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:13 2005
(551 letters)
>mm_chr1_9605263_9606212
Length = 950
Score = 951 bits (492), Expect = 0.0
Identities = 511/518 (98%), Gaps = 3/518 (0%)
Strand = Plus / Minus
Query: 36 aacatagttccaggtgctgctcctgggaccccattttggaaaccactacattaacttctt 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aacatagttccaggtgctgctcctgggaccccattttggaaaccactacattaacttctt 514
Query: 96 tctaaccccctgctactcagtctgttgaccctgtagctgcaagagcagtgccgtatcaga 155
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 513 tctaaccccctgctagtcagtctgttgaccctgtagctgcaagagcagtgccatatcaga 454
Query: 156 aatgaaaccctgggatctattagtggaccagggttcttctgaattaaaatctgcatcagg 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatgaaaccctgggatctattagtggaccagggttcttctgaattaaaatctgcatcagg 394
Query: 216 aaaagccccctagccgactctagtatccacaataatttgagaagcatagatgctaaattc 275
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 393 -aaagccccctagctgactcttgtatccacaataatttgagaagcatagatgctaaattc 335
Query: 276 actttatgatttttggagcaatgaggaatattctgcctatttttctctttct--acacac 333
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 334 actttatgatttttggagcaatgaggaatattctgcctatttttctctttctacacacac 275
Query: 334 acacacacacacacacacacatccacccactcacctatatatatacatagacacagagaa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acacacacacacacacacacatccacccactcacctatatatatacatagacacagagaa 215
Query: 394 aaatctatctcctcttaatttgcaagtcagactgtggcttttctgatgtttccagcctat 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aaatctatctcctcttaatttgcaagtcagactgtggcttttctgatgtttccagcctat 155
Query: 454 ttacatgtatgcaatcgacattggctgaaaatgtcgcttagttttatcttcttgtacctt 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ttacatgtatgcaatcgacattggctgaaaatgtcgcttagttttatcttcttgtacctt 95
Query: 514 cgatcctaagtgcagggtgtgaccaaagaaacttagta 551
||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cgatcctaagtgcagggtgtgaccaaagaaacttagta 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 950
Length adjustment: 10
Effective length of query: 541
Effective length of database: 940
Effective search space: 508540
Effective search space used: 508540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_l24.g1 MSMg01no074_l24.g1 CHROMAT_FILE:
MSMg01no074_l24.g1 PHD_FILE: MSMg01no074_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:13 2005
(531 letters)
>mm_chr1_9519725_9520655
Length = 931
Score = 963 bits (498), Expect = 0.0
Identities = 522/530 (98%)
Strand = Plus / Plus
Query: 2 aattctctatcagatcaaagtatcatttatgtggatgttgaggagccctctcataggcgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aattctctatcagatcaaagtatcatttatgtggatgttgaggagccctctcataggcgg 261
Query: 62 ttccctcccctggactttccaccactctggttgagccagtgataagtctgattgccttgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttccctcccctggactttccaccactctggttgagccagtgataagtctgattgccttgt 321
Query: 122 gcttatggctcagaccacaaaaggaagtcaaaaataatgtacgatttttttaatttttac 181
||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||
Sbjct: 322 gcttatgactcagaccacaaaaggaagtaaaaaataatgtaagattttttaaatttttac 381
Query: 182 ttatgtatgtctatgtaagtgtatggcacatctgtgcaggagccttgacagccaggaaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttatgtatgtctatgtaagtgtatggcacatctgtgcaggagccttgacagccaggaaaa 441
Query: 242 gccagagaagggtgttggagcctagggtactggagttacagaaagttttgaagcatccaa 301
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 442 gccagagaagggtgttggagcctagggaactggagttacagaaagttttgaagcatccaa 501
Query: 302 catgaatgcttagaacaaaatttgagacctccatgagagccgtatacttatactactaac 361
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 502 catgaatgcttagaacaaaatttgagacctccatgagagcagtatacttatactactaac 561
Query: 362 ccatctctccagtctcaagaaagggttttaaacataaaagaattataatggtttaccatc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccatctctccagtctcaagaaagggttttaaacataaaagaattataatggtttaccatc 621
Query: 422 cataaattctctacctctagaaataatctgagatggaaacacttcagtcagaagtaaatg 481
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cataaattctctacctctaaaaataatctgagatggaaacacttcagtcagaagtaaatg 681
Query: 482 taatctacgtactcatggagaagatgatgtatgtaaggcatgtggagatc 531
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taatctaagtactcatggagaagatgatgtatgtaaggcatgtggagatc 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
