BAC Information

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BAC

Clone NameMSMg01-075A13
Chromosome1 (Build37)
Map Location 29,204,904 - 29,205,238
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075A13.T7 (MSMg01no075_a13.b1)MSMg01-075A13.TJ (MSMg01no075_a13.g1)
ACCAG297947AG297948
length712707
length of high quality
(start - end)
640 (73 - 712)619 (74 - 692)
definitionCHROMAT_FILE: MSMg01no075_a13.b1 PHD_FILE: MSMg01no075_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:36 2005CHROMAT_FILE: MSMg01no075_a13.g1 PHD_FILE: MSMg01no075_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCCTACAAAGACTCCGTTTGATTTCCCAGAATTTCAAGTTTGTAT
TAATCATTTTAACTTTAAAAATAATCCAAAATATTTCTGTGACAAAATAA
GGCCTTGACATCCATAATTGAAGATGAAGTGGCAGACTGTGAAATGAAAA
ACACATGTCCCCACTTTCTCCTCTATAAATTACAGTGCCTCTGGTTTTAT
GTGGAGTTCTTTGAATCACTTAGACTTGAGCTTTGTACAAGAATATAAGA
ATGGGTCAATTCTCATTCTTCAACATGATAACCACAAGTTGTTCCAGCAT
CATTTGTTGAAATTTATAGAGGAGAAAGTGGGGAAAAGCCTCAAGGATAT
GGGCACAGGGGAAAAATTCCAGAACAGCAATGGCTTGTGCTGTAAGATCA
AGAATCCACAAATGGGACCTCATAAATTGCAAAGCTTCTGTAAGGCAAAA
GATATTGTCAATAAGACAAAAAGGGCACCAACAGATTGGGAAAGAATTTT
TACCAATCCTAAATCTGATAGGGGACTAATATGTAATATATACAAAGAAC
TCAAGAAGCTGGACTCCAGAAATTCAAGTAACCCCATTAAAAATGGGGTA
CAGAGCTAAACAAAGAATTCTCAACTGAGGAATACTGAAGGGCTGAGAAG
CACTTGAAAAAA
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCACATTTTTT
AATGGGGTTATTTGATTTTATGGAGTCCACCTTCTTGAGTTCTTTATTTA
TATTGGATATTAGTCCCCTATCATATTCAAAATAAGTAAAGATCCTTTAC
CAATATGTTGGTGGTCTTTTTGTCTTATTGACAATGTCTTTTGCCTTGCA
GAAGCTTTGAATTTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAG
CACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCTATATCT
TCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTT
TATGTGAAGTTCCGTGATCCACTTAGATTTGACCTTAGTACAGGGAGATA
AGAATGGATCAATTCCCATTCTTCTACATTATAAGAACCAGTTGTGACAG
CACCATTTGTTGAAAATGCTCTTTCTTCCACTGGATGGTTTTAGCTCCCA
TTTCGAAGATCAAGTAACCTTAGATGTGTGGGTTCATTTCTAGGTCTTCA
ATTCTATCCCATTGGTCTACTTGTCTGTCATTATACCAGTACCATGCAGT
TTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATT
CCACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_a13.b1 MSMg01no075_a13.b1 CHROMAT_FILE:
MSMg01no075_a13.b1 PHD_FILE: MSMg01no075_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:36 2005
         (640 letters)



>mm_chr1_29204904_29205943
          Length = 1040

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatttcccagaatttcaagtttgtattaatcattttaactttaaaaataatccaaaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 335 ttgatttcccagaatttcaagtttgtattaatcattttaactttaaaaatgatccaaaat 276

                                                                       
Query: 61  atttctgtgacaaaataaggccttgacatccataattgaagatgaagtggcagactgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atttctgtgacaaaataaggccttgacatccataattgaagatgaagtggcagactgtga 216

                                                                       
Query: 121 aatgaaaaacacatgtccccactttctcctctataaattacagtgcctctggttttatgt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 215 aatgaaaaacacatgtccccactttcacctctataaattacagtgcctctggttttatgt 156

                                                                       
Query: 181 ggagttctttgaatcacttagacttgagctttgtacaagaatataagaatgggtcaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggagttctttgaatcacttagacttgagctttgtacaagaatataagaatgggtcaattc 96

                                                                       
Query: 241 tcattcttcaacatgataaccacaagttgttccagcatcatttgttgaaatttatagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 95  tcattcttcaacatgataaccacaagttgttccagcatcatttgttgaaatttatagagc 36

                                              
Query: 301 agaaagtggggaaaagcctcaaggatatgggcaca 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  agaaagtggggaaaagcctcaaggatatgggcaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)