BAC Information

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BAC

Clone NameMSMg01-075E11
Chromosome1 (Build37)
Map Location 171,926,174 - 172,013,994
singlet/doubletdoublet
Overlap geneDdr2, LOC100040571
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7
Downstream geneUap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075E11.T7 (MSMg01no075_e11.b1)MSMg01-075E11.TJ (MSMg01no075_e11.g1)
ACCAG298135AG298136
length691692
length of high quality
(start - end)
415 (81 - 495)518 (80 - 597)
definitionCHROMAT_FILE: MSMg01no075_e11.b1 PHD_FILE: MSMg01no075_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:54 2005CHROMAT_FILE: MSMg01no075_e11.g1 PHD_FILE: MSMg01no075_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,926,174 - 171,926,588)(172,013,477 - 172,013,994)
sequence
NNNGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAA
TCCGCGGAATTCATTGGATATCCCCGGCATGAAATCAACCTAGTATGAAG
ACAGTCTTTCCTCCCAAGAATTGAATCAATTAAACAATAAAGAAATGGAA
CAATTTAGATTGTTTTCTAAAGGGATTTTTCATTGTCCTTCATTGCTCTA
ACTCTCAGCTTAAGGCTTTATCCATCCCTAGAGATAGAAAACTGTCTTTG
AAGTGCCCTTTACTGTGAGGCTCTGGCTTTCAAAAGTGTAATTGCCATAT
GGACACTGGTAATCAATTTTTTTTACCTCTGATTTGTCAATAATTAAAAT
ATGAACTTGTCTTCTACAAGATATTCTTTCAACAAATCTTACTTTTTCTT
CTTAGCATTATTATACAAATAAGGAGTTTCTGGCATCAACTATTTGTGTT
AATTTAAGTTCTTAAGAATCGAGAAGAAAATAACATTACCAAGACATACA
GTTTGAAGCTTAAGAGAATTCAAGGAATCTAAAACTTATTCCAAGCTGTT
GCTTGGCCAAAATAAGACAAATGTAAATATTACATACTATGAGAACACAA
AACATTACCACATGGTGCTTCAGAGAGCTGTGCTCATAGATCATCATAAA
ACACGCACGTAAAGAAGGACCTAGATTCAACCATATGTACA
TTTCCTCGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAAATATTTAACTTTTCT
TATGTCTACTTTAGTGCTAAAGAAGAAGATTTCATCCTACTGATCCCATG
GTGTTTTATGCTGTGGCTTATTCATTTATAAACCTTATTATCATTATTAT
TCCACTGAAAAAATACTAGACCTTTGCTCTCATGTAGGTGCTAAAGACTG
TAGGAAAACTTGATTTCATCACACTGTGTAAGAAAGACTGGAAGGGAAAG
CAGCTAGGAGCTGCGGGTGCCTATATGTATAGCCCAATGAGAGAGCAAGG
GGGCCTGTAGCCAAGCAATGCCAAGCAGAAGAGAGAGGAAGAGGTTTTGC
CCTCACTGGAGAGTAACTTCACTGACTCTGGGAGGAACGAGGCACAGCCT
ACTGTGGCTACAGAGCAAGGGACAGTGATTGCATCCAGGAGAAGATGATG
CGGAAAGTACAGGCCACTAGGATCAAGAAAACACCATTAATCTTTGGTTG
TTGTTGCAAAATTGTGCTCTCCAAAGCCTTGGTCAAGGATGCAGAAGCCT
CAGGATGAGCCCTGGGATGCTGTCCTAGGAAATGCGCAGTGGAATTCCCC
TTCATAAATCCTAGAGGCTGGGAGGTCCTCTGACAAGAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_e11.b1 MSMg01no075_e11.b1 CHROMAT_FILE:
MSMg01no075_e11.b1 PHD_FILE: MSMg01no075_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:54 2005
         (415 letters)



>mm_chr1_171925974_171926788
          Length = 815

 Score =  803 bits (415), Expect = 0.0
 Identities = 415/415 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatcaacctagtatgaagacagtctttcctcccaagaattgaatcaattaaacaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaatcaacctagtatgaagacagtctttcctcccaagaattgaatcaattaaacaataa 260

                                                                       
Query: 61  agaaatggaacaatttagattgttttctaaagggatttttcattgtccttcattgctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaatggaacaatttagattgttttctaaagggatttttcattgtccttcattgctcta 320

                                                                       
Query: 121 actctcagcttaaggctttatccatccctagagatagaaaactgtctttgaagtgccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctcagcttaaggctttatccatccctagagatagaaaactgtctttgaagtgccctt 380

                                                                       
Query: 181 tactgtgaggctctggctttcaaaagtgtaattgccatatggacactggtaatcaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgtgaggctctggctttcaaaagtgtaattgccatatggacactggtaatcaatttt 440

                                                                       
Query: 241 ttttacctctgatttgtcaataattaaaatatgaacttgtcttctacaagatattctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttacctctgatttgtcaataattaaaatatgaacttgtcttctacaagatattctttc 500

                                                                       
Query: 301 aacaaatcttactttttcttcttagcattattatacaaataaggagtttctggcatcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaaatcttactttttcttcttagcattattatacaaataaggagtttctggcatcaac 560

                                                                  
Query: 361 tatttgtgttaatttaagttcttaagaatcgagaagaaaataacattaccaagac 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttgtgttaatttaagttcttaagaatcgagaagaaaataacattaccaagac 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no075_e11.g1 MSMg01no075_e11.g1 CHROMAT_FILE:
MSMg01no075_e11.g1 PHD_FILE: MSMg01no075_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:54 2005
         (518 letters)



>mm_chr1_172013277_172014194
          Length = 918

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaaaatatttaacttttcttatgtctactttagtgctaaagaagaagatttcatccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cttaaaatatttaacttttcttatgtctactttagtgctaaagaagaagatttcatccta 659

                                                                       
Query: 61  ctgatcccatggtgttttatgctgtggcttattcatttataaaccttattatcattatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctgatcccatggtgttttatgctgtggcttattcatttataaaccttattatcattatta 599

                                                                       
Query: 121 ttccactgaaaaaatactagacctttgctctcatgtaggtgctaaagactgtaggaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttccactgaaaaaatactagacctttgctctcatgtaggtgctaaagactgtaggaaaac 539

                                                                       
Query: 181 ttgatttcatcacactgtgtaagaaagactggaagggaaagcagctaggagctgcgggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttgatttcatcacactgtgtaagaaagactggaagggaaagcagctaggagctgcgggtg 479

                                                                       
Query: 241 cctatatgtatagcccaatgagagagcaagggggcctgtagccaagcaatgccaagcaga 300
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cctagatggatagcccaatgagagagcaagggggcctgtagccaagcaatgccaagcaga 419

                                                                       
Query: 301 agagagaggaagaggttttgccctcactggagagtaacttcactgactctgggaggaacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agagagaggaagaggttttgccctcactggagagtaacttcactgactctgggaggaacg 359

                                                                       
Query: 361 aggcacagcctactgtggctacagagcaagggacagtgattgcatccaggagaagatgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aggcacagcctactgtggctacagagcaagggacagtgattgcatccaggagaagatgat 299

                                                                       
Query: 421 gcggaaagtacaggccactaggatcaagaaaacaccattaatctttggttgttgttgcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gcggaaagtacaggccactaggatcaagaaaacaccattaatctttggttgttgttgcaa 239

                                                 
Query: 481 aattgtgctctccaaagccttggtcaaggatgcagaag 518
           ||||||||| ||||||||||||||||||||||||||||
Sbjct: 238 aattgtgctttccaaagccttggtcaaggatgcagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)