Query= MSMg01no075_h01.b1 MSMg01no075_h01.b1 CHROMAT_FILE:
MSMg01no075_h01.b1 PHD_FILE: MSMg01no075_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:06 2005
(439 letters)
>mm_chr1_181531253_181532092
Length = 840
Score = 787 bits (407), Expect = 0.0
Identities = 428/435 (98%), Gaps = 1/435 (0%)
Strand = Plus / Minus
Query: 6 gaattctgtctgtgccg-agaaaggatacagtcctcttcctggaaataggtctcagctac 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaattctgtctgtgaggtagaaaggatacagtcctcttcctggaaataggtctcagctac 581
Query: 65 ctgtaaagacagaagaagaaaggagtatttgagtgaaaggaagaactagggagacagcaa 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 580 ctgtaaagacagaagaagaaaggagtatttgagtgaaaggacgaactagggagacagcaa 521
Query: 125 gatcttgtaaggctgctttgataggctactaacaaaatgatttctccacatccatgagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gatcttgtaaggctgctttgataggctactaacaaaatgatttctccacatccatgagtt 461
Query: 185 cagaggaactctgtaggcacaggccacaatcctagggtctccgtcagcaaagctagcaca 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cagaggaactctgtaggcgcaggccacaatcctagggtctccgtcagcaaagctagcaca 401
Query: 245 agtaccctttagccgccacaccaccatgttctttccagtctagtcacgtcctaacaagct 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agtaccctttagccgccaaaccaccatgttctttccagtctagtcacgtcctaacaagct 341
Query: 305 tcacttagccccttaagtttaaaaaggaagaatgcttagggatgaggggaaggctatagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcacttagccccttaagtttaaaaaggaagaatgcttagggatgaggggaaggctatagg 281
Query: 365 cttacaaagctgcagtaggggtcaacaggtttaaaagattattattataaactaatagtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 280 cttacaaagctgcagtaggggtcaacaggtttaaaagattattattataaactaaaagtt 221
Query: 425 agaaatggccaggca 439
|||||||||||||||
Sbjct: 220 agaaatggccaggca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space: 357330
Effective search space used: 357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_h01.g1 MSMg01no075_h01.g1 CHROMAT_FILE:
MSMg01no075_h01.g1 PHD_FILE: MSMg01no075_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:06 2005
(579 letters)
>mm_chr1_181373278_181374254
Length = 977
Score = 982 bits (508), Expect = 0.0
Identities = 566/594 (95%), Gaps = 17/594 (2%)
Strand = Plus / Plus
Query: 1 attcagttc-ccataaaagaatcatttgttgttagaaatgcactacatgtaccacagcaa 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attcagttcaccataaaagaatcatttgttgttagaaatgcactacatgtaccacagcaa 245
Query: 60 acccagcaccaaaaccacaaagggttaacaatttagttctctaatg-------------- 105
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 acccagcaccaaaaccacaaagagttaacaatttagttctctaatgctgaggcctgaggc 305
Query: 106 ctgaggcctgaggcccggctgaaggtccacatcttctcaaggtccccatcttcgctgact 165
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 306 ctgaggcctgaggcccggctcaaggtccatatcttctcaaggtccccatcttcgctgact 365
Query: 166 tcacactgaagggagcagaattcctccacctaggtctgaaacagatgttgtagtcattaa 225
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 366 tcacactgaagggagcagaattcctccacctaggtctgaaacagatgctgtagtcattaa 425
Query: 226 aggtccctggagccagctcagcaataccaggcatacacagctgctgacctgaggatcctg 285
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aggtccccggagccagctcagcaataccaggcatacacagctgctgacctgaggatcctg 485
Query: 286 cctgccagactacagatgcttgcagagctatgcactgcctctgcgtccacagaggcagag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctgccagactacagatgcttgcagagctatgcactgcctctgcgtccacagaggcagag 545
Query: 346 aggcgccatgccctgaatatttgatatcttccggcagactcccttctgttctagtacagt 405
||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct: 546 aggtgccatgccctgaatatctgatatcttcgggcagacttccttctgttctagtacagt 605
Query: 406 agcgggggggttgcacgcataagagggggagagaaaaaacggtccaacgtttagaaagtt 465
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 606 agcgggggg-ttgcacgcataagagggggagagaaaaa-ctgtccaacgtttagaaagtt 663
Query: 466 ctttaagcctccttcctctgtgtccccgtcccttcacagaccttggttttcaatactact 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctttaagcctccttcctctgtgtccccgtcccttcacagaccttggttttcaatactact 723
Query: 526 aaacacatttagctatgtgtatttagatgaataacttcctcagtcacatttcag 579
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agacacatttagctatgtgtatttagatgaataacttcctcagtcacatttcag 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 977
Length adjustment: 10
Effective length of query: 569
Effective length of database: 967
Effective search space: 550223
Effective search space used: 550223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
