Query= MSMg01no075_m16.b1 MSMg01no075_m16.b1 CHROMAT_FILE:
MSMg01no075_m16.b1 PHD_FILE: MSMg01no075_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:32 2005
(515 letters)
>mm_chr1_29049540_29050457
Length = 918
Score = 944 bits (488), Expect = 0.0
Identities = 508/516 (98%), Gaps = 3/516 (0%)
Strand = Plus / Plus
Query: 3 gaattctcctaaaaatgcgtttatttccttcaattactgaggttttctaagttgcattaa 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctcctaaaaatgtgtttatttccttcaattactgaggttttctaagttgcattaa 262
Query: 63 aaaaaaaaa---gtcttctttactttttctagattcttccaatccaagtgctataattat 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaaaaaaaaaagtcttctttactttttctagattcttccaatccaagtgctataattat 322
Query: 120 aaactttcagctagatggacactgaaaacattaacactttggggtttctgtctcccgttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaactttcagctagatggacactgaaaacattaacactttggggtttctgtctcccgttt 382
Query: 180 tagccatggtaaactttgacaagaactttcaaatttctctgccagatgagtgatactgag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 383 tagccatggtaaactttgacaagaactttcaaatttctctgccagatgagtgatattgag 442
Query: 240 ttaggcctgattcatttgctgcacaggaggtgtatcttgtgtacatcatacttgtggaag 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 ttaggcctgattcatttgctgcacaggaggtgtatcttgggtacatcatacttgtggaag 502
Query: 300 gatgaattttggagactcaagatattgatcatcctttgtgtgtgtcttccttaatatacc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatgaattttggagactcaagatattgatcatcctttgtgtgtgtcttccttaatatacc 562
Query: 360 attcagaagggcaaagctttgatattttaggccttcctgtgggtccattcaatatcaaag 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 attcagaagggcaaagctttgatattttagggcttcctgtgggtccattcaatatcaaag 622
Query: 420 gtatgtccttaaaattctactatcttggtttagaggaaatgaataacttttccagcatcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtatgtccttaaaattctactatcttggtttagaggaaatgaataacttttccagcatcc 682
Query: 480 ttaacatcaatcccttatgaaatttttgtactataa 515
|||| |||||||||||||||||||||||||||||||
Sbjct: 683 ttaaaatcaatcccttatgaaatttttgtactataa 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 918
Length adjustment: 10
Effective length of query: 505
Effective length of database: 908
Effective search space: 458540
Effective search space used: 458540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_m16.g1 MSMg01no075_m16.g1 CHROMAT_FILE:
MSMg01no075_m16.g1 PHD_FILE: MSMg01no075_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:33 2005
(606 letters)
>mm_chr1_29205381_29206387
Length = 1007
Score = 1135 bits (587), Expect = 0.0
Identities = 602/607 (99%), Gaps = 1/607 (0%)
Strand = Plus / Minus
Query: 1 agtatcttattgactagatagaacttctgtaggtattctgttatgctgaagtgtttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 agtatcttattgactagatagaacttctgtaggtattctgttatgctgaagtgtttggaa 748
Query: 61 aacaataaaaagttaaataaactcacagaaatggtatgaaaaatgatgattctgtaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aacaataaaaagttaaataaactcacagaaatggtatgaaaaatgatgattctgtaagta 688
Query: 121 caaaaatataactggttcatatagggaccggaaaggtggagggtactatttctgtaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caaaaatataactggttcatatagggaccggaaaggtggagggtactatttctgtaggct 628
Query: 181 agatcaaggatctaattcaggaatagaatggagacatttttagaagagaacttttgggat 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agatcaaggatctaattcagggatagaatggagacatttttagaagagaacttttgggat 568
Query: 241 tcagctgtcaaacatgttaaaatcgctgaaagaaagccagtatcatggagctagaggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcagctgtcaaacatgttaaaatcgctgaaagaaagccagtatcatggagctagaggaaa 508
Query: 301 gtgggttttataccagttataggtcataatgcagattttttcatatatttc-ttctagat 359
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 507 gtgggttttataccagttataggtcataatgcagagtttttcatatatttccttctagat 448
Query: 360 agccagaactacaataaagagagagaaaaataattctataattccatatttatagattac 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 447 agccagaactacaataaagagagagaaaaataattctataatcccatatttatagattac 388
Query: 420 cctctgttctaggggaagtttattttaatttgatagatgtgatatgaatagaaataatga 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cctctgttctaggggacgtttattttaatttgatagatgtgatatgaatagaaataatga 328
Query: 480 tattacctaattctatttcattaaatacataatacattttctggaagtctttttgttgtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tattacctaattctatttcattaaatacataatacattttctggaagtctttttgttgtt 268
Query: 540 atttctgaaaaaaatattctcatctggagccaagttatccttagacttattctcatactc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atttctgaaaaaaatattctcatctggagccaagttatccttagacttattctcatactc 208
Query: 600 agtttcc 606
|||||||
Sbjct: 207 agtttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
