BAC Information

Click to search

BAC

Clone NameMSMg01-075N23
Chromosome1 (Build37)
Map Location 16,324,970 - 16,325,564
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282
Downstream geneStau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075N23.T7 (MSMg01no075_n23.b1)MSMg01-075N23.TJ (MSMg01no075_n23.g1)
ACCAG298585AG298586
length664671
length of high quality
(start - end)
---596 (76 - 671)
definitionCHROMAT_FILE: MSMg01no075_n23.b1 PHD_FILE: MSMg01no075_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:39 2005CHROMAT_FILE: MSMg01no075_n23.g1 PHD_FILE: MSMg01no075_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAAACGAACACTATTTCGNTACCCGCNCGGAANNCN
NNGTTTACCNAACCCGCAGGNNNNAANGGGGNNANNNGANNNNCNGAAGC
CACCNNCNNGACCCACAAANAGANGNNGGAGANNAGGCCCCAAGCGGAAG
NAGGAAAGGNAAAGAACCCCNCCCAANCCGCCGGCGGACAACAAGACCGA
CAGACGGAGACACAAGCCAAGCAGAAACAAAGGAGCACCATTGGACCCAG
ACGACAAAACGCGAGCACACAGAGCGAGCCAAAGCAGAACAGAACAGGAA
AAAATTTTTCTCTCTTACAACNACAAGGCNGGGCCCCACGGCCACCACGA
GAAGCCCCCCCCCCCACAGGAAAAAAGAGAAGACCCAAGAACCACACACA
CAAGACCCCACCACAAGGAGAGAAGAACGGACCGACACGCAAACACCGAC
ACGACAACAACCAGACGCGCCAGCACCAAAAGCCGAAAAAGACGACAAAC
AACCACAGGAAGGAAAAAACACCCAAGCCGAAAACCAAGAGACCACACGA
GAGAGGGAACAAAACAGGAACACCAAAAACAAAACAAAAGAACCACAAGA
AAGACACAAAACCAGAACAACGAAGGAAAAAACTTTTTTTTTTTTTTATA
AAAGAAAAAAAGAG
NTTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTTATACAAAACTAGGCACCTTC
AGCACCACAAAAGATCCCACAACTGTGTAGAGCCAGGAAGGAATGACGAG
CTGCTGCAAAGAGGCATAAGCACATTTTTCATAATAGTGGAAGCAGCTGG
TGCACAGCTGTCGACCTGGAAAGGAGGAATCACATGTACAACTAAAATCA
ACACATTTTTCTATATGAAAATTATTTCCCAACAGTCTTGATTAAAACAT
TTAAAAGATGCTGTGAGTTTAATATTATTTTCCAGAAGGAGTTCTTGCCT
TCTCAAATATTCCAATAAAAAAACTTGGTTTATACTTAAAAAAATGATAG
TACTATATATAGTTGTTTTTCTAATATCTATTTTTGACAGTTAAGTATTT
TTAAATTACATTTATGCATTTCATTTGTGTCTGTGTGTGGATATGTGTGT
GTGTATGGGCGTGTGTGTGTTTGTGGAGGGCAGAGGACCGGAGCTGGCTC
TCCTTCCACTATGTGGGTCCTGAGGGTTAAATTTAGGCCGTCGTTCTTGG
TGGCAAATGACTTTACACATTGATCCACCTCATCATTCCTAAATTTTTTT
GTTGCTGTGACCAAAATCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_n23.g1 MSMg01no075_n23.g1 CHROMAT_FILE:
MSMg01no075_n23.g1 PHD_FILE: MSMg01no075_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:39 2005
         (596 letters)



>mm_chr1_16324770_16325764
          Length = 995

 Score = 1075 bits (556), Expect = 0.0
 Identities = 586/598 (97%), Gaps = 5/598 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttatacaaaactaggcaccttcagcaccacaaaagatcccacaactgtgtagagcca 60
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 201 catttatacaaaactaggcaccttcagcaccacaaaagatcc---aactgtgtagagcca 257

                                                                       
Query: 61  ggaaggaatgacgagctgctgcaaagaggcataagcacatttttcataatagtggaagca 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gggaggaatgacgagctgctgcaaagaggcataagcacatttttcataatagtggaagca 317

                                                                       
Query: 121 gctggtgcacagctgtcgacctggaaaggaggaatcacatgtacaactaaaatcaacaca 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gctggtgcacagctgttgacctggaaaggaggaatcacatgtacaactaaaatcaacaca 377

                                                                       
Query: 181 tttttctatatgaaaattatttcccaacagtcttgattaaaacatttaaaagatgctgtg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttttctaaatgaaaattatttcccaacagtcttgattaaaacatttaaaagatgctgtg 437

                                                                       
Query: 241 agtttaatattattttccagaaggagttcttgccttctcaaatattccaataaaaaaa-- 298
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  
Sbjct: 438 agtttaatattattttccagaaggagttcttgttttctcaaatattccaataaaaaaaaa 497

                                                                       
Query: 299 cttggtttatacttaaaaaaatgatagtactatatatagttgtttttctaatatctattt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttggtttatacttaaaaaaatgatagtactatatatagttgtttttctaatatctattt 557

                                                                       
Query: 359 ttgacagttaagtatttttaaattacatttatgcatttcatttgtgtctgtgtgtggata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgacagttaagtatttttaaattacatttatgcatttcatttgtgtctgtgtgtggata 617

                                                                       
Query: 419 tgtgtgtgtgtatgggcgtgtgtgtgtttgtggagggcagaggaccggagctggctctcc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgtgtgtgtgtatgggcgtgtgtgtgtttgtggagggcagaggaccggagctggctctcc 677

                                                                       
Query: 479 ttccactatgtgggtcctgagggttaaatttaggccgtcgttcttggtggcaaatgactt 538
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 678 ttccactatgtgggtcctgagggttaaatttaggccgtcgctcttggtggcaaatgactt 737

                                                                     
Query: 539 tacacattgatccacctcatcattcctaaatttttttgttgctgtgaccaaaatcagg 596
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tacacattgagccacctcatcattcctaaatttttttgttgctgtgaccaaaatcagg 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space:   577210
Effective search space used:   577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)