BAC Information

Click to search

BAC

Clone NameMSMg01-075O12
Chromosome1 (Build37)
Map Location 31,210,722 - 31,210,963
singlet/doubletsinglet
Overlap gene4931428L18Rik
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616
Downstream geneLOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056, LOC100041238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075O12.T7 (MSMg01no075_o12.b1)MSMg01-075O12.TJ (MSMg01no075_o12.g1)
ACCAG298610AG298611
length714706
length of high quality
(start - end)
243 (76 - 318)627 (75 - 701)
definitionCHROMAT_FILE: MSMg01no075_o12.b1 PHD_FILE: MSMg01no075_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:41 2005CHROMAT_FILE: MSMg01no075_o12.g1 PHD_FILE: MSMg01no075_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGATTCATTTTCGCNGG
AATTCCGAACCTTACCTAACACAGTGACCTCATCTGTCCAAACCACGTGA
GGGGAGAAGTTTTGTGTCTTCCTTTAGGAGTTAGATAAATGATCTAACAT
TAGTCATTAGGATTAATGATTCTAGTGCAGTCCTCTGATAAGAAACAAGC
ATGATATCCTAAAATAGAAAGAATACAATCAAGGAATGTACTCTCACATA
AATATCGATTCTGATAAGAGAATTGTGGAAAGTCCCACACTTGGTGAATC
ATTAGCTCACAGGAAGGTTGATTACTTCTCAGGACTGGTGACAGGAATAG
AGACTGGGCATATGTTGCCACCTGCTGTTTGCTCGCTGCTATTATTCCCT
TACGCAACAATTCCCCAAACCTGCATTTCTTTTACCAGAAAGCTCATCCT
TGCCTCAATCCCATTCTCTTTTAAAATCACTTTCGCTTTAATTAACTTAC
TTTTAAGTACAATACCAACCCGCCCATGGAGAGTGATCCTTCTTTTATAC
ACTGCAAAATCTCCCGAAATCTCCTTCACCATGCTGAAACCAACAAACAA
AACCAGCTTTGTGGTCTTGACCGGCTACAGTTCACGCAATCTGACATCTT
ATTTTTTTTTTTTCTCATTATCCCACCTGAATTCCGAAGCAATTCAAGAT
CTCTGTGTTTTGTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTACCAGGAATCCCACAGCTACCAC
ACTCTCCTGAGAACTAGCAAGGGCAACAGAAACCAAGAGACAAAACATCC
ATACATCCAACAACCAGAAGACTAGATATCAGCACCTAGAATTACAATCA
TCCCAAACCCAGATCTCTAGATGCCAGAACAATATTCCAATAATATCCAG
GACAATATGTCTCCACTAAAGTCAAAAAACACTTCTCTAGTGGGACCTAA
GAAATGCAATATAGCTGAAGCTCAGAGAAGAACTTCAAAAAAGGTCCTTA
AAGATGAAATGAACAAATCTGTTATAGAAATCTATATAAACATAGCAGAA
TGAAAGGAAGAAAGCATACAAATAGAAATAGAATCAATTTTTTTTTAAAG
CTGAACTTAGGGAAGACTGGTAAGGAAACATTTAGGAACTCAAACAGGAA
ACTCAGAAGCAAGCATCACCAACAGAATATAAAAGCTGGAAGAGAAAATC
TCAGTCTCTATTGGAGATGTGATAGAAGAAATGAATGTTTATCAAATAAG
ATGTTAAGTCTAAAAAAACCTCAGGCAGAGAGCATCTAGGANATGTGGGA
CACTGTGACAAAACTAAATCTAAGAGTAATAGGAACAGAANAAGGAGAAT
AAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_o12.b1 MSMg01no075_o12.b1 CHROMAT_FILE:
MSMg01no075_o12.b1 PHD_FILE: MSMg01no075_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:41 2005
         (243 letters)



>mm_chr1_31210522_31211164
          Length = 643

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacctcatctgtccaaaccacgtgaggggagaagttttgtgtcttcctttaggagttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacctcatctgtccaaaccacgtgaggggagaagttttgtgtcttcctttaggagttaga 260

                                                                       
Query: 61  taaatgatctaacattagtcattaggattaatgattctagtgcagtcctctgataagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatgatctaacattagtcattaggattaatgattctagtgcagtcctctgataagaaa 320

                                                                       
Query: 121 caagcatgatatcctaaaatagaaagaatacaatcaaggaatgtactctcacataaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagcatgatatcctaaaatagaaagaatacaatcaaggaatgtactctcacataaatat 380

                                                                       
Query: 181 cgattctgataagagaattgtggaaagtcccacacttggtgaatcattagctcacaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgattctgataagagaattgtggaaagtcccacacttggtgaatcattagctcacaggaa 440

             
Query: 241 gg 242
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)