BAC Information

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BAC

Clone NameMSMg01-075O18
Chromosome1 (Build37)
Map Location 139,557,136 - 139,557,338
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075O18.T7 (MSMg01no075_o18.b1)MSMg01-075O18.TJ (MSMg01no075_o18.g1)
ACCAG298622AG298623
length749724
length of high quality
(start - end)
204 (42 - 245)548 (69 - 616)
definitionCHROMAT_FILE: MSMg01no075_o18.b1 PHD_FILE: MSMg01no075_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:43 2005CHROMAT_FILE: MSMg01no075_o18.g1 PHD_FILE: MSMg01no075_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCGGAATTCAC
AAGTATTTTATCGATATTATCTTATATATTGCTCTTATATGTATTGGGTT
GGCTAACATGAGAGATTTTAAAGAACATACTACTTACACCTATAATCATA
GAAAAAAGAAGTTCCTGGATTTAGTCAGAGGAGTGCCTACCTTGCAGTAA
ATAGTTGTAAACTTAGAGGTTCATCATTACCTGAGATGCATAAAGTGAGC
AATGCGTGTGGATCCAGCCCTGATCCCCGTCCCTTATATGGAAACCTTTC
TTAAAAAATTCGGGGCCAAGAGAAAATTTTTTTTTAAAAATACTTCCTTC
CTCTACACCACCTTCTTTATTTTCCCCCTTGCGCGTATTCTCCCTTCTTT
CCCCCCCTTTCTCTCCTATTCTTTTTAGCTTCCCCCCCTCTCTCTTTCCC
TTCGCCCTCCTTTTTCCTCGCCGCCTCCCTTCCCTCTCTTCCCTCCTTTT
ATCTCCTCTTCCTCCTTTACCCCGCCATCCTTTCCTTTTTCTTTACCCTT
CTCTTCTTCCTCTCCCCCTTATCCTCCCCCCTTTTTCTCTCTCCCTTTTC
CTTTTACCCCCCCCCTACTTCCCGCATGTCTTTTTTTTCCCCACCCCTCT
ACTCTTTTCTCTCTCCTTCCCCCCCCCCCCCTTTCCCCTTCACCAATCCC
TTTTTCCCTCCTTTTTCTCCTCTTTCTTCTCTTCTCTCTCTATCGGGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAAACTAGGATACCCAAGATATAAGATACAATTTCCTAAATAC
ATGAAACTCAAGACCAATGAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_o18.b1 MSMg01no075_o18.b1 CHROMAT_FILE:
MSMg01no075_o18.b1 PHD_FILE: MSMg01no075_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:43 2005
         (204 letters)



>mm_chr1_139556935_139557538
          Length = 604

 Score =  364 bits (188), Expect = e-105
 Identities = 200/204 (98%), Gaps = 2/204 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcacaagtatttta-tcgatattatcttatatattgctcttatatgtattgggttg 60
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattcacaagtattttact-gatattatcttatatattgctcttatatgtattgggttg 346

                                                                       
Query: 61  gctaacatgagagattttaaagaacatactacttacacctataatcatagaaaaaagaag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 345 gctaacatgagagattttaaagaacataccacttacacctataatcatagaaaaaagaag 286

                                                                       
Query: 121 ttcctggatttagtcagaggagtgcctaccttgcagtaaatagttgtaaacttagaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 285 ttcctggatttagtcagaggagtgcctaccttgcagtaaatagttgtaaacttagagatt 226

                                   
Query: 181 catcattacctgagatgcataaag 204
           ||||||||||||||||||||||||
Sbjct: 225 catcattacctgagatgcataaag 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)