Query= MSMg01no075_p17.b1 MSMg01no075_p17.b1 CHROMAT_FILE:
MSMg01no075_p17.b1 PHD_FILE: MSMg01no075_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:47 2005
(622 letters)
>mm_chr1_138496508_138497530
Length = 1023
Score = 1152 bits (596), Expect = 0.0
Identities = 614/620 (99%), Gaps = 3/620 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgttttgacagcagtttcagcaaatttccccggttgccattttatcaagataa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gaattcatgttttgaaagcagtttcagcaaatttccccggttgccattttatcaagataa 764
Query: 65 ctctctcagtcatcttttctgcc-acaaatattctcaaccaaactggctaccccaaacct 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 763 ctctctcagtcatcttttctgccaacaaatattctcaaccaaactggctaccccaaacct 704
Query: 124 tgtatatcgtaagaaattc-ttcccttgggtctagctgaatagcagatctcagaatacag 182
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgtatatcgtaagaaattcattcccttgggtctagctgaatagcagatctcagaatacag 644
Query: 183 aacactaagaaaaaaatgcttagttttcagaacctctgtagtaaaaatttccctggacct 242
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 643 aacactaagaaaaaaatgcttagttttcagaacctctgtagtaaaaaattccctggacct 584
Query: 243 cccaagagaaataataaaaagattatgtaatatgattaaatgctaactcacaataaaata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cccaagagaaataataaaaagattatgtaatatgattaaatgctaactcacaataaaata 524
Query: 303 aagccctatgggatgttctgggcatgggggtgcagtgcagggattagtggcttgcacagt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aagccctatgggatgttctgggcatgggggtgcagtgcagggattagtggcttgcacagt 464
Query: 363 cacaatacccggctttcaaagactcactctactgaaaagttgctcgagagaggtgaagtt 422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 463 cacaatacccggctttcaaagactcactctactgaaaagttgctcgaaagaggtgaagtt 404
Query: 423 gaggaccatcaagcccagagaatgacctcaaccagataaggaggttgggatctatttgca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaggaccatcaagcccagagaatgacctcaaccagataaggaggttgggatctatttgca 344
Query: 483 tgctgcaaaaaaaaccaggaaggaaattgccaaaatagtaccagggactttccctccttc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgctgcaaaaaaaaccaggaaggaaattgccaaaatagtaccagggactttccctccttc 284
Query: 543 catcattttctctgattttttcagtgtctttttcttcaccccactttctcgttagtatgg 602
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 catcattttctctga-tttttcagtgtctttttcttcaccccactttctcgttagtatgg 225
Query: 603 ggtcttgattatttgcccag 622
||||||||||||||||||||
Sbjct: 224 ggtcttgattatttgcccag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1023
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1013
Effective search space: 619956
Effective search space used: 619956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_p17.g1 MSMg01no075_p17.g1 CHROMAT_FILE:
MSMg01no075_p17.g1 PHD_FILE: MSMg01no075_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:47 2005
(598 letters)
>mm_chr1_138326093_138327090
Length = 998
Score = 1000 bits (517), Expect = 0.0
Identities = 583/617 (94%), Gaps = 19/617 (3%)
Strand = Plus / Plus
Query: 1 ttcctgagcagcagcaggaagtggagttgggtagccagggtggggtcaaattatagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctgagcagcagcaggaagtggagttgggtagccagggtggggtcaaattatagaggc 260
Query: 61 cctgaagggaggcaggagcttgtggatctgatgtgggagacagtgaggccttctaaatta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgacgggaggcaggagcttgtggatctgatgtgggagacagtgaggccttctaaatta 320
Query: 121 ctcgttgggcatagcatggtaaaagtggtgttttagggaggcaatctccctgctctcggt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctcgttgggcatagcatggtaaaagtggtgttttagggaggcgatctccctgctctcggt 380
Query: 181 acatgagatttaaagaggaaggacccagagaccaggcatccagcaaaccagccaaggagt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 acatgagatttaaagaggaaggacccagagaccaggcatccagcgaaccagccaaggagt 440
Query: 241 gaggttgtcaaaggcagggtggaggccccgggactgaagggttaaatctgagagtccctg 300
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggggtcaagggcagggtggaggccccgggactgaagggttaaatctgagagtccctg 500
Query: 301 taaagtaatcatttatgaggcttctgatgacatatggcatacgcccaaagaaggcagctg 360
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 taaagtaatcatttatgaggcttctgatgacatatggcatatggggaaagaaggcagctg 560
Query: 361 gagaggcgactccagaaattatagttgtgcctttaattttagaaagggtaaccgagtaaa 420
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaggtgactccagaaattatagctgtgcctttaattttagaaagggtaaccgagtaaa 620
Query: 421 tgtgggtcctggtaatattgtctgagcttggccttgctgtgaacagcaaacgaaggggaa 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 621 tgtgggtcctggtaatattgtctgagcttggccttgctgtgaacagcagacgacggggaa 680
Query: 481 tgcttttctcctgcacaaggagtgcactggagtctgtga-------------------ca 521
||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 681 tgcttttctcctgcacagggagtgcactggagtctgtgatgtctactggagtctgtgaca 740
Query: 522 tctggtcctccaagagaaggctggagggaagtgagccgagaagacagagctgagagcctg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctggtcctccaagagaaggctggagggaagtgagccgagaagacagagctgagagcctg 800
Query: 582 gcgtgtgaagctgctgc 598
|||||||||||||||||
Sbjct: 801 gcgtgtgaagctgctgc 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
