BAC Information

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BAC

Clone NameMSMg01-076C11
Chromosome1 (Build37)
Map Location 100,423,138 - 100,423,421
singlet/doubletsinglet
Overlap genenone
Upstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868
Downstream geneEG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076C11.T7 (MSMg01no076_c11.b1)MSMg01-076C11.TJ (MSMg01no076_c11.g1)
ACCAG298798AG298799
length708788
length of high quality
(start - end)
505 (36 - 540)288 (133 - 420)
definitionCHROMAT_FILE: MSMg01no076_c11.b1 PHD_FILE: MSMg01no076_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:02 2005CHROMAT_FILE: MSMg01no076_c11.g1 PHD_FILE: MSMg01no076_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGC
CCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT
CAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTA
TTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGC
AAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATA
TAAGTGACCCTATTAATTCTACCAGAGAACTCCTAAACCTGATAAACAGC
TTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTT
TCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACAC
CCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACT
AAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAACGA
AATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG
GCAGGATCAACATTGTATAAATGGCTATATTGCCAAAAGCAACCTACAGA
TTCAATGCAATCCCCATCAAAATTCCACCTCCATTCTTCACCGAATTGCA
ACGAACAT
NNNNNNNNNNNNNNNNNNNNNNCCCCCTCCCCCCCCCCCCNNTNTTTGTG
TTTNTTNTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATGTGGGGGTGCTTG
GGGGAAAGAAGGTGTCCACTAGGCTCTAAACTTGCCAGTTGCAGTGGTTG
TTTATGAGGGTCACTTACCTGTAACCCTGAATACAGTAGAAGTCCTGGGA
GGACTTCAGATTGTGGTGTCTCCAGAGGAGCAGGCAAGCTGGTGATCTGT
CCCAGTGGAAGGCCATAGAGAAACTTTTACAACATAGGCACTGTACCTTA
CTGATTATTGGATATGCAAGGATTGTATCCGGCACATGCTGGGTACTAAA
TTACATTCGGAGGAATACATGAGCAGCTGACTAAAGGATCCAGGGTCAAA
GCACTACAAATCATTTTGTTCCACATTCATTTTGATATTATTCCACTCTA
CTTCCCTATCCAGTGGGAAGACACCATTGAGATGAGGAAAATTTAAATTG
AAGAAACGTTTTATTTTTGTCTCCTAGTTTTCTAGGTTTCAATCCACACT
CCGCTGACTCCATTGTGAATTGGCCTTGGTCTAATAGAAAAAATTCATTC
AGGTCTAATGTAGTAACCCCACTGCTACTCTTACTTTCACGACTATGCTC
GGAGATGTCAGTCCTACCTGCAAAATTCTTGTTTGTCATAAGTTACTGTG
TTTTGTAAAACCTGGATTTGAACTTTTCCATGCTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_c11.g1 MSMg01no076_c11.g1 CHROMAT_FILE:
MSMg01no076_c11.g1 PHD_FILE: MSMg01no076_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:02 2005
         (288 letters)



>mm_chr1_100422758_100423445
          Length = 688

 Score =  422 bits (218), Expect = e-122
 Identities = 269/286 (94%), Gaps = 4/286 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatgtgggggtgctt-ggggga-aagaaggtgtccactaggctctaaacttgccagtt 58
           ||||||||||| ||||| |||||| || ||||| ||||||||  ||||||||||||||||
Sbjct: 664 agtatgtggggatgcttggggggagaa-aaggtatccactagattctaaacttgccagtt 606

                                                                       
Query: 59  gcagtggttgtttatgagggtcacttacctgtaaccctgaatacagtagaagtcctggga 118
           || ||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||
Sbjct: 605 gcggtggttgtttaggagggtcacttacc-ataaccctgaatacagtagaactcctggga 547

                                                                       
Query: 119 ggacttcagattgtggtgtctccagaggagcaggcaagctggtgatctgtcccagtggaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggacttcagattgtggtgtctccagaggagcaggcaagctggtgatctgtcccagtggaa 487

                                                                       
Query: 179 ggccatagagaaacttttacaacataggcactgtaccttactgattattggatatgcaag 238
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggccatagagaaacttttataacataggcactgtaccttactgattattggatatgcaag 427

                                                         
Query: 239 gattgtatccggcacatgctgggtactaaattacattcggaggaat 284
           | ||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct: 426 gcttgtatctggcacacgctgggtactaaattaaattcggaggaat 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)