Query= MSMg01no076_h02.b1 MSMg01no076_h02.b1 CHROMAT_FILE:
MSMg01no076_h02.b1 PHD_FILE: MSMg01no076_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:25 2005
(339 letters)
>mm_chr1_51994356_51995095
Length = 740
Score = 567 bits (293), Expect = e-166
Identities = 327/341 (95%), Gaps = 6/341 (1%)
Strand = Plus / Plus
Query: 5 gaattcagagagt-tacataattttaatgtgagccgctaagaccccaaatgaaagcacaa 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagagcctaaataattttaatgtgagccgctaagaccccaaatgaaagcacaa 264
Query: 64 tcctataattactccttaaaatatacagtagacattatatagagatgtatagattataga 123
||||| | ||||||||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 265 tcctacatttactccttaaaatatacaataggcattatgtagagatgtatagattataga 324
Query: 124 tggagataggcagattctcattatgtaaccccagctgacctagaactcactagtagtgca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagataggcagattctcattatgtaaccccagctgacctagaactcactagtagtgca 384
Query: 184 gtctagtctcaaattcatagaggtctccggctctgccacctcacctgaccactgggataa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtctagtctcaaattcatagaggtctccggctctgccacctcacctgaccactgggataa 444
Query: 244 tacatt-----taccagcataatgaattatatagagaactattctgcctaaaggaacata 298
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 tacattacatttaccagcataatgaattatatagagaactactctgcctaaaggaacata 504
Query: 299 gatgaggcaatatttaaattaaacagtgatctgatttgcat 339
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgaggcaatatttaaattaaacagtgatctgatttgcat 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space: 241230
Effective search space used: 241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_h02.g1 MSMg01no076_h02.g1 CHROMAT_FILE:
MSMg01no076_h02.g1 PHD_FILE: MSMg01no076_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:25 2005
(135 letters)
>mm_chr1_52163423_52163956
Length = 534
Score = 228 bits (118), Expect = 9e-65
Identities = 131/136 (96%), Gaps = 3/136 (2%)
Strand = Plus / Minus
Query: 1 catct-aaaatggaaacggaaatgattgttaaggaaaccatcttgcacataaattgctgt 59
||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 334 catctaaaaatggaaacggaaatgattgttaaggaaaccgtcttgcaaataaattgctgt 275
Query: 60 tttgatagagtaaacactcttttgtctactaaacaatctgtaatctttctaccaattaac 119
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttgatagagtaaacactc--ttgtctactaaacaatctgtaatctttctaccaattaac 217
Query: 120 taaggattcattaaag 135
||||||||||||||||
Sbjct: 216 taaggattcattaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 534
Length adjustment: 8
Effective length of query: 127
Effective length of database: 526
Effective search space: 66802
Effective search space used: 66802
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
