BAC Information

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BAC

Clone NameMSMg01-076J07
Chromosome1 (Build37)
Map Location 60,418,759 - 60,551,303
singlet/doubletdoublet
Overlap geneCyp20a1, Abi2, Raph1
Upstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
Downstream geneLOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076J07.T7 (MSMg01no076_j07.b1)MSMg01-076J07.TJ (MSMg01no076_j07.g1)
ACCAG299124AG299125
length701769
length of high quality
(start - end)
326 (69 - 394)285 (136 - 420)
definitionCHROMAT_FILE: MSMg01no076_j07.b1 PHD_FILE: MSMg01no076_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:36 2005CHROMAT_FILE: MSMg01no076_j07.g1 PHD_FILE: MSMg01no076_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,418,759 - 60,419,084)(60,551,019 - 60,551,303)
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATTCTCCAAAATTCCACAGCATCAACTCCTATATAAGTTCTTTTTCTCTG
CTTGCCATAGGCGGCAGAGCTGGGGTCAGACACAACTCCAGTTTGCTGTG
TGTTAGATTCTCTCATCCTCCAGAGCAGAACTGTACGAGCTTTCATCACA
GTTCTCTGAACAGCATGCAGTGTAAAACTTAGAAATGATTTCCAGAACTC
TCCACTTAATATTTTAGAGCAGCTATCCTTAGGTGAAGAGAGACTGCTGT
GTGTGGGATTATTTTGTTGGTGGCATGAAATTAATGTTTTTGTTGTGTCT
GATTGTGGTGCTGGGACTTGAACCCAGGACTTGGTGCATGCTGGGCATGT
GACCGCCCACCCAGCTACACCGTCATCCTGGAAGCTGCATAGTGCTGTGT
TTTAGCTGATCCCAAAGTCATTGCCAAAAATGTCAACTTGACACTTTGCA
ATCCTTTTATGGGCTACTTCCTGTTTTTCTAAAGATTAAGTCTATATTGC
TTTTGCTCTCTTTAAAGACGGACATTCCTCACATATGCTAAATATTTTTC
ATTTTGACTATTTTACTCTCTTTCTCACCGGACTTATTCCCCTTATTAAC
ATGAAGCTGTGTCCTTAATTTGCTGTCCTCTTGTCGTCTTTCTCTTGTCC
T
NNNNNNNCCCCNNNNNNNNNNNNNNNCCCTTTTCTACTCCTTCTCCACCC
AACTCACTCTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCAGCCAGGAC
TACACAGAGAAACTGTTTTGAGGGGGAAAAAAAGAAAGAGAGTGGGCACG
GAAAGCCAAAGGAAAAAAAGAAAAATACATACTATGTAGTATAAAATTAT
AAGATACATCACTGTGAATCCATGCTAATGTAAACCAATAAACAAGAAAC
AAACCTTCAAACAAATTTTAAAAGATTTAAAATACATTTTTAATTAAAAT
ATAATGACATCATCTTTTGTCCCTTCCCCCAGTTCCATCCATGCCTCCCC
AAACTCTTAAATTGATGGCCTCTACAGAAGGATTTATTATTATGCATATG
TGCGTTTACATGAGCTGTGTGTACCATGTGTCTGCACATGGAGGCGAGAT
GGGGCACTGGCCCCCTGCTCGCTCCTGATCACTGATATCTCTCCAGTCCC
ACCTAATAACCCTAAATGCTTCCTGCACTTCATTTTGCCCCTCTTTAAGG
GCACTACATAATGCTTTCCCCTACAAAAGGCATAGGCCTCTTCACCGTGG
CACAATCCTTACCTCCATTTGTTCAGCCCAGGATTCCCACCTAGTTTCCG
ATCTCTGCTCAGTGCCATGAGCCCCTTATTTCTTTCTGGTGTTTTTAATC
TGATCAAAAGCATATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_j07.b1 MSMg01no076_j07.b1 CHROMAT_FILE:
MSMg01no076_j07.b1 PHD_FILE: MSMg01no076_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:36 2005
         (326 letters)



>mm_chr1_60418559_60419284
          Length = 726

 Score =  615 bits (318), Expect = e-180
 Identities = 324/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatcaactcctatataagttctttttctctgcttgccataggcggcagagctggggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatcaactcctatataagttctttttctctgcttgccataggcggcagagctggggtca 260

                                                                       
Query: 61  gacacaactccagtttgctgtgtgttagattctctcatcctccagagcagaactgtacga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacaactccagtttgctgtgtgttagattctctcatcctccagagcagaactgtacga 320

                                                                       
Query: 121 gctttcatcacagttctctgaacagcatgcagtgtaaaacttagaaatgatttccagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttcatcacagttctctgaacagcatgcagtgtaaaacttagaaatgatttccagaac 380

                                                                       
Query: 181 tctccacttaatattttagagcagctatccttaggtgaagagagactgctgtgtgtggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tctccacttaatattttagagcagctatccttaggtgaagagagactgctgtgtggggga 440

                                                                       
Query: 241 ttattttgttggtggcatgaaattaatgtttttgttgtgtctgattgtggtgctgggact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattttgttggtggcatgaaattaatgtttttgttgtgtctgattgtggtgctgggact 500

                                     
Query: 301 tgaacccaggacttggtgcatgctgg 326
           ||||||||||||||||||| ||||||
Sbjct: 501 tgaacccaggacttggtgcgtgctgg 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_j07.g1 MSMg01no076_j07.g1 CHROMAT_FILE:
MSMg01no076_j07.g1 PHD_FILE: MSMg01no076_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:36 2005
         (285 letters)



>mm_chr1_60550927_60551611
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggcagccaggactacacagagaaactgttttgagggggaaaaaaagaaagagagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caaggcagccaggactacacagagaaactgttttgagggggaaaaaaagaaagagagtgg 318

                                                                       
Query: 61  gcacggaaagccaaaggaaaaaaagaaaaatacatactatgtagtataaaattataagat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcagggaaagccaaaggaaaaaaagaaaaatacatactatgtagtataaaattataagat 258

                                                                       
Query: 121 acatcactgtgaatccatgctaatgtaaaccaataaacaagaaacaaaccttcaaacaaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 257 acatcactgtgaatccatgctaatgtaaacaaataaacaagaaacaaaccttcaaacaaa 198

                                                                       
Query: 181 ttttaaaagatttaaaatacatttttaattaaaatataatgacatcatcttttgtccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 197 ttttaaaagatttaaaatacatttttaattaaaatataatgacatcaccttttgtccctt 138

                                                        
Query: 241 cccccagttccatccatgcctccccaaactcttaaattgatggcc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cccccagttccatccatgcctccccaaactcttaaattgatggcc 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)