XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTC
AATGAAAATGCAGAACACCATATCAAAACTTCTTGGACACATGAAAGCAG
TGCTAAGAGAAAAACTCATAGCTTTGAGTGCCTGCAAAAAGAAACTGGAG
AGAGCATACAAGAGCAGCTTGACAGCACACCTGAAAGCTCTAGAACAAAT
ACACCAGAGAGGAGTAGGAAATAATCAAATTCAGGGCTGAAGTCAACCAA
GTAGAACCAAAAAGAACTATAGAAAGACTCAACAAAATCAGGAACTGGTT
CTTTGAGAAAATCAACAAGATTGATAAACCTTAGCCAGACTAACCAGAGG
ACAGAGAGATAGTATCTAATTAACAAAATCAGAAATGAAAAGGGAGATGT
TTCAAAAGAAACTAAGGAAATTAAAAAAGCCACTAGACCCTACTACAAAA
ACCAATAATCAGCAAAACGGGACACTATGGATGAAATGGACAATTTCCTA
GACAGATACCAGGAACCAAAGTTAAATTAGGATCAGATAAACCATCTAAA
CAATTCCATAAGTCTTAAAGAAATAGAAATATTCATTTAAACTCTCCCAA
CCAAAAAAAAAAAAAAAATGACCAGGACCAGATGGTTTTAGTGCAGAATA
CTATCTAACTTTCAAAGAAGACCTAATATCAATACTCTTCAAAGTATAGC
ACAAAAATAGAA

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGGTTGCCTACAGTTCTTTGTGTA
GAGTTGAGGCCTCCTGTACCTTTCCCTGTCTGCATTAACATGTCTGCTGT
TGTTGTCTTTGTCCAGCTCTTGTTTAGATAGTCATATTGGTGAAACTTTA
TAGCTTAAACTGCTGACATTCCTAGGAAAGACAATCTCACAACTAACTGC
TATTACTGTTCTCTGCTGTTACATTCTTTCTGCCTCCTCTTCCACAATTA
TCCCTGAACCATAGATGCAGAAGGTATAGTGTAGATGTGTTTGTTTGAAT
TTGACTCCATGGCTCTGCATTTTGCTGGTCTGTAAGTATCTCAGTCTACT
GTAAATATAGTTAGTCCTCTCCAGGAATTATAAAGTTTTTATTTTCATTT
CAGTTGCAGATGCAGGAACTCAAATTTAGAGAACTAAATATTGATACAAC
AAATGAGGGATTTTTAAAAATCAATTTATCATGAAGTTAATGTTGTTAAA
TGTTAAATTGCAGTGTATAATAGATTTATCTACAATATGATTCAAAAATA
AAATCAATAAGGTTCACAAATACTGATTACATTGCAAACATTTAGACAAT
TACTATGAAAAAATGGTTAAGGATTTTCATTACTATGTCTACTGCTATCC
CCCCTGTTCCTTTC

Query= MSMg01no078_a19.g1 MSMg01no078_a19.g1 CHROMAT_FILE:
MSMg01no078_a19.g1 PHD_FILE: MSMg01no078_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:15 2005
         (640 letters)



>mm_chr1_31611476_31612515
          Length = 1040

 Score = 1207 bits (624), Expect = 0.0
 Identities = 636/640 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggttgcctacagttctttgtgtagagttgaggcctcctgtacctttccctgtctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggttgcctacagttctttgtgtagagttgaggcctcctgtacctttccctgtctgca 260

                                                                       
Query: 61  ttaacatgtctgctgttgttgtctttgtccagctcttgtttagatagtcatattggtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacatgtctgctgttgttgtctttgtccagctcttgtttagatagtcatattggtgaa 320

                                                                       
Query: 121 actttatagcttaaactgctgacattcctaggaaagacaatctcacaactaactgctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttatagcttaaactgctgacattcctaggaaagacaatctcacaactaactgctatt 380

                                                                       
Query: 181 actgttctctgctgttacattctttctgcctcctcttccacaattatccctgaaccatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgttctctgctgttacattctttctgcctcctcttccacaattatccctgaaccatag 440

                                                                       
Query: 241 atgcagaaggtatagtgtagatgtgtttgtttgaatttgactccatggctctgcattttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcagaaggtatagtgtagatgtgtttgtttgaatttgactccatggctctgcattttg 500

                                                                       
Query: 301 ctggtctgtaagtatctcagtctactgtaaatatagttagtcctctccaggaattataaa 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 cttgtctgtaagtatctcagtctactgtaaatatagttagtcctctccaggaattatgaa 560

                                                                       
Query: 361 gtttttattttcatttcagttgcagatgcaggaactcaaatttagagaactaaatattga 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttttattatcatttcagttgcagatgcaggaactcaaatttagagaactaaatattga 620

                                                                       
Query: 421 tacaacaaatgagggatttttaaaaatcaatttatcatgaagttaatgttgttaaatgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaacaaatgagggatttttaaaaatcaatttatcatgaagttaatgttgttaaatgtt 680

                                                                       
Query: 481 aaattgcagtgtataatagatttatctacaatatgattcaaaaataaaatcaataaggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattgcagtgtataatagatttatctacaatatgattcaaaaataaaatcaataaggtt 740

                                                                       
Query: 541 cacaaatactgattacattgcaaacatttagacaattactatgaaaaaatggttaaggat 600
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacaaatactgattccattgcaaacatttagacaattactatgaaaaaatggttaaggat 800

                                                   
Query: 601 tttcattactatgtctactgctatcccccctgttcctttc 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttcattactatgtctactgctatcccccctgttcctttc 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)