BAC Information

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BAC

Clone NameMSMg01-078F01
Chromosome1 (Build37)
Map Location 42,717,610 - 42,718,168
singlet/doubletsinglet
Overlap gene2610017I09Rik
Upstream geneLOC383634, LOC666582
Downstream genePou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078F01.T7 (MSMg01no078_f01.b1)MSMg01-078F01.TJ (MSMg01no078_f01.g1)
ACCAG299680AG299681
length708666
length of high quality
(start - end)
262 (49 - 310)558 (72 - 629)
definitionCHROMAT_FILE: MSMg01no078_f01.b1 PHD_FILE: MSMg01no078_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:36 2005CHROMAT_FILE: MSMg01no078_f01.g1 PHD_FILE: MSMg01no078_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTTCCTACACGTGTCTTGTAATCTCCACACATACACATACA
CATACACATACACATACACATACACATACACATACACATACACATACACA
TACACATACACATACACACATACATACACACATATATGCACATATATATA
TACATACATGCACATACACACATGCATGCATACATACATACATACATATG
TGCATGCATCTACAAGGAGTGGTAGGAATGGAAGAATGTGTGTGTGTATG
TGTAAGTGTAGGTATCAATGTGTGTGCATCTGTCTGAGCATCAGAAAAGT
GACATACACCACCTCCCCCCCCCCGTCTCCCTTTCTCCCCTACCTATCAG
ACACTTAACCCTTAACCACCCCCCCGTTCCCAACCCCAAAACCACTCATA
AATACCTTGTTCTAATCACTATCCCCCTGTCCTTAAAGGTTCCACCCACC
ACATTACACCCATAAACCATATCTCCCCATGACATACCTCACACCAACAT
ACTATAACCAAAGTACTTTAACCAGAACTCTATTTGCCACCATATCTATT
ATATAATACAACACAAATCATTTGTAACACACCCAAATACAATATACAGC
ATATTCCAAACACCATAGCTAATATACCTTTCCAATTATACACACCTTCC
TCTTCTAA
NCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGACACGCTCAGCAACACAGGGAGTGACT
CCTCGTCTCAAACAAAGACTTCTGGAAGCCACTCACAAAAGCCTCTGGGA
ATTATGATCGAGGAAGGACGGTCTCTTGAAATCCAGCAAATGGCCTCAGA
GGAAAGCAGTGCACCCAGCCACCATCGGGAGAGACTTAACCTCCTCGGCA
AGGAACAGGACCTGAAAGATGATGCCTGAGGTGGGATTGGAAGTGAAAAT
GGAAAGAATGCATAAACGAGAGCCACTTACTCGTGGCAGGCTAGAGGGAA
ATGGTGAGCGACACCTGCGTGCATGTATTAAAGGAAAAGATTTGTGATCC
ATCTTTTGCATAAGTTACCAGTGGGCAACTAGGCTTGTTCTCCCTAAACA
CCCTTCTGAGATGCAGCTTAAATAAACCCCCAACCTCCTAGCTCTAGATA
GCTCTCTTCTCCGACACACATCAGTCAATTTCCCCAGAAGACACCCAGGA
AATGAGACACCTGGCACAATCTTCAAAAAGTCTTTGCAGCCTCTGGGGTA
CCGTTTTGTTACCCTAAATGATCACTGACATGTTCCAAATTAATTTAATG
CATCTGCTAGAGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_f01.g1 MSMg01no078_f01.g1 CHROMAT_FILE:
MSMg01no078_f01.g1 PHD_FILE: MSMg01no078_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:36 2005
         (558 letters)



>mm_chr1_42717410_42718368
          Length = 959

 Score = 1065 bits (551), Expect = 0.0
 Identities = 557/559 (99%), Gaps = 1/559 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacacgctcagcaacacagggagtgactcctcgtctc-aaacaaagacttctggaagcc 59
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 201 tgacacgctcagcaacacagggagtgactcctcgtctcaaaacaaagacttccggaagcc 260

                                                                       
Query: 60  actcacaaaagcctctgggaattatgatcgaggaaggacggtctcttgaaatccagcaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcacaaaagcctctgggaattatgatcgaggaaggacggtctcttgaaatccagcaaa 320

                                                                       
Query: 120 tggcctcagaggaaagcagtgcacccagccaccatcgggagagacttaacctcctcggca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcctcagaggaaagcagtgcacccagccaccatcgggagagacttaacctcctcggca 380

                                                                       
Query: 180 aggaacaggacctgaaagatgatgcctgaggtgggattggaagtgaaaatggaaagaatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaacaggacctgaaagatgatgcctgaggtgggattggaagtgaaaatggaaagaatg 440

                                                                       
Query: 240 cataaacgagagccacttactcgtggcaggctagagggaaatggtgagcgacacctgcgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaacgagagccacttactcgtggcaggctagagggaaatggtgagcgacacctgcgt 500

                                                                       
Query: 300 gcatgtattaaaggaaaagatttgtgatccatcttttgcataagttaccagtgggcaact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatgtattaaaggaaaagatttgtgatccatcttttgcataagttaccagtgggcaact 560

                                                                       
Query: 360 aggcttgttctccctaaacacccttctgagatgcagcttaaataaacccccaacctccta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcttgttctccctaaacacccttctgagatgcagcttaaataaacccccaacctccta 620

                                                                       
Query: 420 gctctagatagctctcttctccgacacacatcagtcaatttccccagaagacacccagga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctctagatagctctcttctccgacacacatcagtcaatttccccagaagacacccagga 680

                                                                       
Query: 480 aatgagacacctggcacaatcttcaaaaagtctttgcagcctctggggtaccgttttgtt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgagacacctggcacaatcttcaaaaagtctttgcagcctctggggtaccgttttgtt 740

                              
Query: 540 accctaaatgatcactgac 558
           |||||||||||||||||||
Sbjct: 741 accctaaatgatcactgac 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space:   520052
Effective search space used:   520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)