BAC Information

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BAC

Clone NameMSMg01-078G12
Chromosome1 (Build37)
Map Location 4,646,770 - 4,647,249
singlet/doubletsinglet
Overlap genenone
Upstream geneXkr4, LOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853
Downstream geneLOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078G12.T7 (MSMg01no078_g12.b1)MSMg01-078G12.TJ (MSMg01no078_g12.g1)
ACCAG299750AG299751
length719706
length of high quality
(start - end)
371 (44 - 414)481 (68 - 548)
definitionCHROMAT_FILE: MSMg01no078_g12.b1 PHD_FILE: MSMg01no078_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:43 2005CHROMAT_FILE: MSMg01no078_g12.g1 PHD_FILE: MSMg01no078_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCCCTAACACTGTCCGTCCATGGGTAATTTTGTTTGGGAGACTTTT
AATAACTGCTTGTATTTCATTAGGGGTTATAGTTCTATTTATATTATTTA
TCTTGATTTAACTTTGGTAAGTGGTATCTATTGAGAAGATTATCTATTTC
TTTTAGATTGCCCAAGTTCATGGAGTACATATCTTTAAACTATGTCTTTA
TGGTTCTCTGGATTTCCCATTTTATTTCTGATTTTTCTTAATTTAGACGT
CATCTTTCCATCTTCTAGGTAGTTTTGATATGGATTTTGATAATCTTATT
GATTTTTCTCAAAGGGCTAACTCTTGGTGTGATTATTTGTATTGTTCTCT
TTGTTTCCTTTTCACTGATTCAGCCCTCAGTTTGATACTTCTTACCATCT
ACTCCTCTTGGATATAGGCTTTTGGCCCTAGAGTTCTCGGGTATGCTTGC
AATTTGCTAGTATGAAATCTCTCCAGCCTCGTCATGTCATTTATCATTGA
ATTACTGACCTGCTTTTTTTTGCCCGTTTTTTTATGACCCTTGCGCCGCT
CTTCCCCTCCTTTTGCTCCTCCCTTCCCTTTTATTTTTTCACTCCATTTT
TTCCCCCCCTCTCCCATCCACTTTCTTTCAATCATTTCTCCCCTCTTTTT
CTCCCCCCCTCCCCCCCTC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAACAAAACCACAAACATCAATGATAGAAAATG
AACAACATATTGAATGGGCATTAACAAATTAAATGTCAGAAAACAGGCAT
CTGGAAATGTGCTCATGTCATAAGTGGTTATGGAAGTACAAACTCAAATG
GCAATGGTAGGTGGGATGACAGATGGCTCAGGGTTTGACCCACACATTAA
CCATTACTATCAACTCATCAGCAGGAACAATTAGTTTCATAAAATTAAGA
TTAGCTGTTAGTTTCCATTTTAAAAGTTTTAAACAAAAGCTACATTTTGG
ATCTACTGTACAAACATCAGAGTTCCTTTGTCCTGCTCTGGAGAGTGACA
GTATTTTCTCTGTGCAGGGATCCAGGGCTGCCTCTGTCCCTGGATCTTGT
AAGCCTACACAGGGGCAGGGAGGTGGGGCACAGTCTAGGGCTTGGAGCTG
CTATTATTCAGGTTGCCTTCGTTTATCCTGTGGATAAGGAGTCCCAAGTC
ATTGGTTCTTTATTGAACATATTAACAGCCATTCCCTTCGCTGTTTGGCT
GTGCTGTGCTTACCCCCTCTGACTTACTTTATAGCGACCTTTTCTACCGC
AGATATTTTTCTTTTTAATTTTCCTGTAAAAATGCTAATTTATTATTAGA
GCATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_g12.g1 MSMg01no078_g12.g1 CHROMAT_FILE:
MSMg01no078_g12.g1 PHD_FILE: MSMg01no078_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:43 2005
         (481 letters)



>mm_chr1_4646569_4647449
          Length = 881

 Score =  890 bits (460), Expect = 0.0
 Identities = 475/480 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aacaaaaccacaaacatcaatgatagaaaatgaacaacatattgaatgggcattaacaaa 61
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 202 aacaaaaccacaaacatcaatgatagaaaatgagcaacatattgaatgggcattaacaaa 261

                                                                       
Query: 62  ttaaatgtcagaaaacaggcatctggaaatgtgctcatgtcataagtggttatggaagta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaaatgtcagaaaacaggcatctggaaatgtgctcatgtcataagtggttatggaagta 321

                                                                       
Query: 122 caaactcaaatggcaatggtaggtgggatgacagatggctcagggtttgacccacacatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caaactcaaatggcaatggtaggtgggatgacagatggctcagggtttgacccacacatt 381

                                                                       
Query: 182 aaccattactatcaactcatcagcaggaacaattagtttcataaaattaagattagctgt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaccattactatcaactcatcagcaggaacaattagtttcataaaattaagattagctgt 441

                                                                       
Query: 242 tagtttccattttaaaagttttaaacaaaagctacattttggatctactgtacaaacatc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tagtttccattttaaaagttttaaacaaaagctacattttggatctactgtacaaacatc 501

                                                                       
Query: 302 agagttcctttgtcctgctctggagagtgacagtattttctctgtgcagggatccagggc 361
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 502 agagttcctttgtcctgctctggagagtgacagtattttctctgtgccgggatccagggc 561

                                                                       
Query: 362 tgcctctgtccctggatcttgtaagcctacacaggggcagggaggtggggcacagtctag 421
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 562 tgcctctgtccctggatcttgtaagcctacacaggggcagggaggcggggcacagtctag 621

                                                                       
Query: 422 ggcttggagctgctattattcaggttgccttcgtttatcctgtggataaggagtcccaag 481
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 622 ggcttggagctgctattattcaggtcgcctccgtttatcctgtggataaggagtcccaag 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)