BAC Information

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BAC

Clone NameMSMg01-078G20
Chromosome1 (Build37)
Map Location 33,303,362 - 33,303,551
singlet/doubletsinglet
Overlap genenone
Upstream geneKhdrbs2, EG408191, EG633498, LOC213711, LOC100040828
Downstream geneEG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078G20.T7 (MSMg01no078_g20.b1)MSMg01-078G20.TJ (MSMg01no078_g20.g1)
ACCAG299766AG299767
length691693
length of high quality
(start - end)
191 (124 - 314)582 (73 - 654)
definitionCHROMAT_FILE: MSMg01no078_g20.b1 PHD_FILE: MSMg01no078_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:45 2005CHROMAT_FILE: MSMg01no078_g20.g1 PHD_FILE: MSMg01no078_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTATAATTGCGGCGCTAAAAGACTCCATTTCGTACCGAGCCGCG
GAANTCCTCTTTTACAGGACCGATTTTTNNCNGCTGAAGACCTGNCTTAG
TAAGTGCGAACAAACATTCACCAAACAAACAAACCACAAACAAACCTGTT
TTTTTACTGTATGCATGTCACATGTATTTACCTATGAATTTCTTGATGTG
TTTCATCAGAAAGTATTCCTATTGTACACGTACATGTGACATGCATTTAT
TTTTTTCCTGAGCTGATTTGGATTATAGAACAGTATCATTGAGGATTTCT
ACAAGCCTCAGAATTTCCATACATTGNCCTACACAAATATTTATAGCATT
TCATTCTCTGCTGCCCTCACTTAGTGTTAAGCACATCAAGTGGTGTGCTG
TCTCTGAAGCATGACAGTGTGACCATGCTGTGAAAAGCAAGACAGCACAA
CGAAAGTGAATCTCTGTTGAGAACCAGCTCCAAACTTGCCTCCAAAGCCA
CTCACACCCTTTCTTTCCTGCACATACTATATGCCATATCCGTTTATCTC
TATTGATGGAACCTTGTATAACCATAGAAAACCCACCCTAATACTTGATA
TACATTTGTTCACTCACACACCCATTAATTCCCCTAACCACTAAATTTTT
TTTTTTTTCTCTTGCACGTTTTCAACAGTGCTGTATTGCCA
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGAGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGAGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGG
ACACATGCTCCACTATGTTCTTAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATCTATTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_g20.b1 MSMg01no078_g20.b1 CHROMAT_FILE:
MSMg01no078_g20.b1 PHD_FILE: MSMg01no078_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:45 2005
         (191 letters)



>mm_chr1_33303162_33303752
          Length = 591

 Score =  321 bits (166), Expect = 2e-92
 Identities = 184/190 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaacaaaccacaaacaaacctgtttttttactgtatgcatgtcacatgtatttacct 60
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 390 aacaaacaaaccacagacaaacctgtttttttactgtatgcatgtcatatgtatttacct 331

                                                                       
Query: 61  atgaatttcttgatgtgtttcatcagaaagtattcctattgtacacgtacatgtgacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atgaatttcttgatgtgtttcatcagaaagtattcctattgtacacgtacatgtgacatg 271

                                                                       
Query: 121 catttatttttttcctgagctgatttggattatagaacagtatcattgaggatttctaca 180
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 catttatggctttcctgagctgatttggattatagaacagtatcattgaggatttctaca 211

                     
Query: 181 agcctcagaa 190
           || |||||||
Sbjct: 210 agtctcagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)