BAC Information

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BAC

Clone NameMSMg01-078M06
Chromosome1 (Build37)
Map Location 182,618,427 - 182,618,794
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9
Downstream geneMixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078M06.T7 (MSMg01no078_m06.b1)MSMg01-078M06.TJ (MSMg01no078_m06.g1)
ACCAG300023AG300024
length731720
length of high quality
(start - end)
370 (42 - 411)274 (67 - 340)
definitionCHROMAT_FILE: MSMg01no078_m06.b1 PHD_FILE: MSMg01no078_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:11 2005CHROMAT_FILE: MSMg01no078_m06.g1 PHD_FILE: MSMg01no078_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAATCTCTCACCATTCATTAAATGACTAAAAAACACAATAGATGCTTCT
AATATCAGGTAAGTCATAGGTATGTGATGATGTGTATGAATTCTGCTTAT
TTGTACAGTATTTGTGTATTTTATTTATCCTTTAAATCTATTTAGACAAG
CTTTTCACTTCTAGTCATCCTATTGACGGAACAGATGTGTTACATAAGCT
CTGCATGAAGGCGTCAGGACATAAGCTCTGGGTTTGGTTTACTGCAGAGC
AGTGACCCTTTCAGTACCTTCAGTGCCCTGGCACACCTTTGCTCCTAGCG
TGCAGCTCGGAAACAGATCTGCACCTTCCCTGAAGGCTTTTTCTTACCTT
TTGTTTTGGTTTGTTTGTTTGTTTGTTTGTTGTTTGAGGCGACTGGTTCT
CTCTGTGTATCCCTACTGCCCTTGTTTTTTCCCTGCACCCTGTCCTCCTG
CTCACTCACACCGACCTTCCTCCTTTGTCCCGACACCTCCGTTTTTGTTC
CCTCGTTGTTTATCCTCCTCCTTTTTCTATTACCTTTTTTATTTTCCCCC
CCCCCCCCCTTTTCCCCCCCCTTTCCATTCTTTTTTCCTTTTTTCTTTTT
TCTTTGATTTTTTTTCCCATCCTCCCCTACCTGTTTTTATTATCTTTTCT
CCTATTTCTCTTCCTCCCCTTTTCTCCCCCC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTTGGCTTCCATTTCTAGGTCAAAATCCATCAT
TAAGGTAAGCCAGGGCAGGAACTCAAGGTAAAAGTCACAGAGGAGTGCAG
CTCACTGGCCCATGTGTGGCTGAGCTAGCTTGCTGATATAGCAGGCCCAC
GTGCCTAAGGATGGCGATGTTCACAATAGGCTGGGCCCTCCTCCACCCAT
CAATCATGAAGTTCTCTCATAGACAGGGGCCACAAGCCAATTTGATCTGG
GCAATCCCTCAACTGAGACAATCTTTTTTTTTTTTTTTCAAGACAGGGCT
TTCCTGTTTAGCCCTAGTTGTCCTGTAACTCACTCTATAGACCAGGCTGG
CCTCAACCTCAAAAATCCACCTGCCTCTGCCTCCTAAGTGCTGGGATTAA
AGGCGTGCGACATCATTTGCCCCGCCTACTGATACCACCCTACATGATGC
TTTGTTGCTCCCCCCTGATCGTCTTAGCTAGCTAGCCCCCCCGGTCTTGT
CTTTGCTTGGTGCTTACATGTTCAGCCCAGATAATACCCACCTTGCCCCT
ATTGCATGTTCAACGTAATTTTTGCGCGCCCACCTCATTTCTATCTACTT
CCTTCTTTTCTCCACCCCCCCACTACTTCCTTTTCCTTTGCCTTGCCCCT
CACCTGTTCTAGGCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_m06.b1 MSMg01no078_m06.b1 CHROMAT_FILE:
MSMg01no078_m06.b1 PHD_FILE: MSMg01no078_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:11 2005
         (370 letters)



>mm_chr1_182618223_182618994
          Length = 772

 Score =  658 bits (340), Expect = 0.0
 Identities = 361/368 (98%), Gaps = 2/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatctctcacc-attcattaaatgac-taaaaaacacaatagatgcttctaat 62
           |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatctctcacagattcattaaatgacataaaaaacacaatagatgcttctaat 264

                                                                       
Query: 63  atcaggtaagtcataggtatgtgatgatgtgtatgaattctgcttatttgtacagtattt 122
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 265 atcaggtaagtcataggtatgtgatgacgtgtaggaattctgcttatttgtacagtattt 324

                                                                       
Query: 123 gtgtattttatttatcctttaaatctatttagacaagcttttcacttctagtcatcctat 182
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 gtgtattttgtttatcctttaaatctatttagacaagcttttcacttctagtcatcctgt 384

                                                                       
Query: 183 tgacggaacagatgtgttacataagctctgcatgaaggcgtcaggacataagctctgggt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgacggaacagatgtgttacataagctctgcatgaaggcgtcaggacataagctctgggt 444

                                                                       
Query: 243 ttggtttactgcagagcagtgaccctttcagtaccttcagtgccctggcacacctttgct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggtttactgcagagcagtgaccctttcagtaccttcagtgccctggcacacctttgct 504

                                                                       
Query: 303 cctagcgtgcagctcggaaacagatctgcaccttccctgaaggctttttcttaccttttg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctagcgtgcagctcggaaacagatctgcaccttccctgaaggctttttcttaccttttg 564

                   
Query: 363 ttttggtt 370
           ||||||||
Sbjct: 565 ttttggtt 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 772
Length adjustment: 9
Effective length of query: 361
Effective length of database: 763
Effective search space:   275443
Effective search space used:   275443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)