Query= MSMg01no078_n12.b1 MSMg01no078_n12.b1 CHROMAT_FILE:
MSMg01no078_n12.b1 PHD_FILE: MSMg01no078_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:17 2005
(539 letters)
>mm_chr1_170824820_170825758
Length = 939
Score = 930 bits (481), Expect = 0.0
Identities = 490/493 (99%), Gaps = 1/493 (0%)
Strand = Plus / Minus
Query: 46 tcatctcattagaaag-ttataatagtggcttgtgtcaatattgtctttcaaactttgac 104
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 tcatctcattagaaagtttataatagtggcttgtgtcaatattgtctttcaaactttgac 880
Query: 105 cacgtgcttaagatagtatcttctaggtttggctactataacattactattctatatttt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 cacgtgcttaagatagtatcttctaggtttggctactataacattactattctatatttt 820
Query: 165 gtattaataagcatgttgcttagcattactttgagactggaatactcaaatgcttatcaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gtattaataagcatgttgcttagcattactttgagactggaatactcaaatgcttatcaa 760
Query: 225 accttaccaacctaattttatttagagattgtttcgtttctcctttattttttaatcgag 284
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 759 accttaccaacctaattttagctagagattgtttcgtttctcctttattttttaatcgag 700
Query: 285 aattctaatatctaagggaaatgcctttctatattttctccctacctcattctttccctc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aattctaatatctaagggaaatgcctttctatattttctccctacctcattctttccctc 640
Query: 345 ctttactttcttcttttctgcacgtcatgacttgtgttttcttaaaccacacataaaagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctttactttcttcttttctgcacgtcatgacttgtgttttcttaaaccacacataaaagt 580
Query: 405 tgctcttcctctgaggtccagttccaaacctggttatgctctccattctttcttggcatt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgctcttcctctgaggtccagttccaaacctggttatgctctccattctttcttggcatt 520
Query: 465 catctgtaccattggcttgagttaactggaatgtgttaatggcttccaactttctaactt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 catctgtaccattggcttgagttaactggaatgtgttaatggcttccaactttctaactt 460
Query: 525 tgctttcattacc 537
|||||||||||||
Sbjct: 459 tgctttcattacc 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_n12.g1 MSMg01no078_n12.g1 CHROMAT_FILE:
MSMg01no078_n12.g1 PHD_FILE: MSMg01no078_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:18 2005
(532 letters)
>mm_chr1_170668034_170668965
Length = 932
Score = 1021 bits (528), Expect = 0.0
Identities = 528/528 (100%)
Strand = Plus / Plus
Query: 1 agacaggagattaaataactctcaacagcataccataaatgttaacaagcctttatttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacaggagattaaataactctcaacagcataccataaatgttaacaagcctttatttat 260
Query: 61 tgcatgttgttcctgaggtatccaagtcacctcgagagagtctggtgaaatgcacaccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatgttgttcctgaggtatccaagtcacctcgagagagtctggtgaaatgcacaccgt 320
Query: 121 ctctgttaaggcatgcccatgcaggtagacagtccatagaggctgaaagggagagcaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgttaaggcatgcccatgcaggtagacagtccatagaggctgaaagggagagcaaca 380
Query: 181 agcattccaagcggggtgttttagatctgggccctgaggggtccacaagtgatccaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcattccaagcggggtgttttagatctgggccctgaggggtccacaagtgatccaggca 440
Query: 241 gggtgagtggaggtactacagcaaatctgatttttcttcagagagattttggaaacaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgagtggaggtactacagcaaatctgatttttcttcagagagattttggaaacaata 500
Query: 301 cttgaagttacagccaatgttaatgacattggcttctttgtcctaacaaaccagcccgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgaagttacagccaatgttaatgacattggcttctttgtcctaacaaaccagcccgct 560
Query: 361 gtacagtgaaccttctgcttcatagctaagagcttgggcatttccagtatgaaaagtact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtacagtgaaccttctgcttcatagctaagagcttgggcatttccagtatgaaaagtact 620
Query: 421 agagactggtaataacttgttctctctatatatctgtagatatttaaaaaaaaaacagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagactggtaataacttgttctctctatatatctgtagatatttaaaaaaaaaacagtg 680
Query: 481 tgaaagttcatgtattaaatacttttctcactataagaaaaattttac 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaagttcatgtattaaatacttttctcactataagaaaaattttac 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
