Query= MSMg01no080_d21.b1 MSMg01no080_d21.b1 CHROMAT_FILE:
MSMg01no080_d21.b1 PHD_FILE: MSMg01no080_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:05 2005
(431 letters)
>mm_chr1_122021300_122022130
Length = 831
Score = 803 bits (415), Expect = 0.0
Identities = 427/431 (99%), Gaps = 1/431 (0%)
Strand = Plus / Plus
Query: 1 tatcagatcgtgggctagaacaaacaaggtgaactctggccagaggcctgtgcaatctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tatcagatcgtgggctagaacaaacaaggtgaactctggccagaggcctatgcaatctcc 260
Query: 61 tggtcacgctcccagctttggaagcagaggatttaagatggggaacccagccaacttatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtcacgctcccagctttggaagcagaggatttaagatggggaacccagccaacttatc 320
Query: 121 aggcagactgactcagcccatcagtaggagttgccagtgttggagcttgtcctcgtggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcagactgactcagcccatcagtaggagttgccagtgttggagcttgtcctcgtggtt 380
Query: 181 atgagtctagaaggtatcactctggctgcccacaggcttccttgagctcagcgtagttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagtctagaaggtatcactctggctgcccacaggcttccttgagctcagcgtagttag 440
Query: 241 actgagcaggtgtgaaatgcctactttgaagcaaatcagaaagaagttggttattttata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgagcaggtgtgaaatgcctactttgaagcaaatcagaaagaagttggttattttata 500
Query: 301 actaccatgccactactggatcaataggcatatcttgtcaggcaggtcagcaccgtaact 360
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 501 actaccatgccactactggatcaataggcatatcttgtcaggcaggtcagtatcgtaact 560
Query: 361 caaaggatccaacactggataagacctagcagtttgcagtacaccttctggctatgtaag 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaggatccaacactggata-gacctagcagtttgcagtacaccttctggctatgtaag 619
Query: 421 ctagccagcac 431
|||||||||||
Sbjct: 620 ctagccagcac 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_d21.g1 MSMg01no080_d21.g1 CHROMAT_FILE:
MSMg01no080_d21.g1 PHD_FILE: MSMg01no080_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:05 2005
(520 letters)
>mm_chr1_122147545_122148464
Length = 920
Score = 967 bits (500), Expect = 0.0
Identities = 515/520 (99%)
Strand = Plus / Minus
Query: 1 acctccatcaaattggcctgtgggcaagtcagtgggccatggtcttggttggtctagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acctccatcaaattggcctgtgggcaagtcagtgggccatggtcttggttggtctagaaa 559
Query: 61 ggcccaccccactggggagagtgtcacccttgggctcctgggtgctagaaatcagaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggcccaccccactggggagagtgtcacccttgggctcctgggtgctagaaatcagaggaa 499
Query: 121 gaggagcaaaaggaagcagtgttcctggggttgtcatggcttaaggactgtcactggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaggagcaaaaggaagcagtgttcctggggttgtcatggcttaaggactgtcactggcag 439
Query: 181 gcacccaggctccacttctaaacttgctgatgccctgcccatcttcctattgtgccacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcacccaggctccacttctaaacttgctgatgccctgcccatcttcctattgtgccacca 379
Query: 241 ccccaggcgtcacttcctcccagcctctgcttccctttggccatctctgttttcctttag 300
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccccaagcgccacttcctcccagcctctgcttccctttggccatctctgttttcctttag 319
Query: 301 acaaggtctcatagaatccaggctggcctcaaactcactctgtacccgaggatggcctca 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 acaaggtctcatagaatccaggctggcctcaaactcactctgtaggtgaggatggcctca 259
Query: 361 cagttctggtccttttgcctttgagattataggcatgcatcgccacttccagtttactga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagttctggtccttttgcctttgagattataggcatgcatcgccacttccagtttactga 199
Query: 421 atgcagggggcaaaggggtcaaacccagggcttcctgcttgctaggcaagcactcttctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atgcagggggcaaaggggtcaaacccagggcttcctgcttgctaggcaagcactcttctg 139
Query: 481 actcagccacacccccaccctactcctcaccccattaagc 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 actcagccacacccccaccctactcctcaccccattaagc 99
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
