TGCGGCCGCTATACGACTCCTATATGCAGAGATCCGCGGAATTCCGAACC
TCACTTAATTCAGTGACCTCATCTGTCCAACCACGTGAGGGGAGAAGTTT
TGTGTCTTCCTTTAGGAGTTAGATAAATGATCTAACATTAGTCATTAGGA
TTAATGATTCTAGTGCAGTCCTCTGATAAGAAACAAGCATGATATCCTAA
AATAGAAAGAATACAATCAAGGAATGTACTCTCACATAAATATCGATTCT
GATAAGAGAATTGTGGAAAGTCCCACACTTGGTGAATCATTAGCTCACAG
GAAGGGTGATCACCTCACAGGACTGGTGACAGGAATAGAGACTGGGCAGA
TGTTGCCACCTGCTGTTTGCTCGCTGCTATTATTCCCTTACGTAACAATT
CCCCAAAGCTGCATTTCTTTTACCAGAAAGCTCATCCTTGCCTCAATCCC
ATTCTCTTTTAAAATCACTTTCGTTTTAATTAACTTACTTTTAAGTACAA
TACCAACCCGTTCATGGAGAGTGATCCTTCTTTTATAGATTGGAAAATTT
CTCGAAATCTCCTTTAGCATGCTGAAACAAACAAACAAAACCAGCTTTGG
GTTTTGACAGGCTACAGTTTATGTAATTGAAATCTCATTGAAAAGCACAT
CATTATCCAATTGAATCTGAAGCAATCAAGATCACTGGGTTGCTACTGAG
TTTTAGTCTGTGT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTACCAGGAATCCCACAGCTACCACACTCTCCTGA
GAACTAGCAAGGGCAACAGAAACCAAGAGACAAAACATCCATACATCCAA
CAACCAGAAGACTAGATATCAGCACCTAGAATTACAATCATCCCAAACCC
AGATCTCTAGATGCCAGAACAATATTCCAATAATATCCAGGACAATATGT
CTCCACTAAAGTCAAAAAACACTTCTCTAGTGGGACCTAAGAAATGCAAT
ATAGCTGAAGCTCAGAGAAGAACTTCAAAAAAGGTCCTTAAAGATGAAAT
GAACAAATCTGTTATAGAAATCTATATAAACATAGCAGAATGAAAGGAAG
AAAGCATACAAATAGAAATAGAATCAATTTTTTTTTAAAGCTGAACTTAG
GGAAGACTGGTAAGGAAACATTTAGGAACTCAAACAGGAAACTCAGAAGC
AAGCATCACCAACAGAATATAAAAGCTGGAAGAGAAAATCTCAGTCTCTA
TTGGAGATGTGATAGAAGAAATGAATGTTTATCAAATAAGATGTTAAGTC
TAAAAAAACCTCAGGCAGAGAGCATCTAGGAAATGTGGGACACTGTGACA
AAACTAAATCTAAGAGTAATAGGAACAGAAAAAGGAGAAAAAACACAGGA
CAAAGGCACAGAAAAT

Query= MSMg01no080_e19.b1 MSMg01no080_e19.b1 CHROMAT_FILE:
MSMg01no080_e19.b1 PHD_FILE: MSMg01no080_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:09 2005
         (641 letters)



>mm_chr1_31210490_31211531
          Length = 1042

 Score = 1207 bits (624), Expect = 0.0
 Identities = 633/636 (99%), Gaps = 1/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccgaacctcacttaattcagtgacctcatctgtccaa-ccacgtgaggggagaag 65
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 207 gaattccgaacctcacttaattcagtgacctcatctgtccaaaccacgtgaggggagaag 266

                                                                       
Query: 66  ttttgtgtcttcctttaggagttagataaatgatctaacattagtcattaggattaatga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttttgtgtcttcctttaggagttagataaatgatctaacattagtcattaggattaatga 326

                                                                       
Query: 126 ttctagtgcagtcctctgataagaaacaagcatgatatcctaaaatagaaagaatacaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttctagtgcagtcctctgataagaaacaagcatgatatcctaaaatagaaagaatacaat 386

                                                                       
Query: 186 caaggaatgtactctcacataaatatcgattctgataagagaattgtggaaagtcccaca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caaggaatgtactctcacataaatatcgattctgataagagaattgtggaaagtcccaca 446

                                                                       
Query: 246 cttggtgaatcattagctcacaggaagggtgatcacctcacaggactggtgacaggaata 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttggtgaatcattagctcacaggaagggtgatcacctcacaggactggtgacaggaata 506

                                                                       
Query: 306 gagactgggcagatgttgccacctgctgtttgctcgctgctattattcccttacgtaaca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gagactgggcagatgttgccacctgctgtttgctcgctgctattattcccttacgtaaca 566

                                                                       
Query: 366 attccccaaagctgcatttcttttaccagaaagctcatccttgcctcaatcccattctct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 attccccaaagctgcatttcttttaccagaaagctcatccttgcctcaatcccattctct 626

                                                                       
Query: 426 tttaaaatcactttcgttttaattaacttacttttaagtacaataccaacccgttcatgg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tttaaaatcactttcgttttaattaacttacttttaagtacaataccaacccgttcatgg 686

                                                                       
Query: 486 agagtgatccttcttttatagattggaaaatttctcgaaatctcctttagcatgctgaaa 545
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 687 agagtgatccttcttttatagattgggaaatttctcgaaatttcctttagcatgctgaaa 746

                                                                       
Query: 546 caaacaaacaaaaccagctttgggttttgacaggctacagtttatgtaattgaaatctca 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 caaacaaacaaaaccagctttgggttttgacaggctacagtttatgtaattgaaatctca 806

                                               
Query: 606 ttgaaaagcacatcattatccaattgaatctgaagc 641
           ||||||||||||||||||||||||||||||||||||
Sbjct: 807 ttgaaaagcacatcattatccaattgaatctgaagc 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space:   651192
Effective search space used:   651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)