BAC Information

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BAC

Clone NameMSMg01-080F12
Chromosome1 (Build37)
Map Location 99,198,489 - 99,198,817
singlet/doubletsinglet
Overlap geneEG634331
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1
Downstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F12.T7 (MSMg01no080_f12.b1)MSMg01-080F12.TJ (MSMg01no080_f12.g1)
ACCAG301210AG301211
length705699
length of high quality
(start - end)
354 (40 - 393)329 (68 - 396)
definitionCHROMAT_FILE: MSMg01no080_f12.b1 PHD_FILE: MSMg01no080_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:13 2005CHROMAT_FILE: MSMg01no080_f12.g1 PHD_FILE: MSMg01no080_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCACCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCTACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTACCCTATCTG
ATTTAGGATAGGTAAAGTTCCTTTCCCAATCTGTTGGTCGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGGGTTTCATGAGGTC
CCATTTGTCAATTGTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCA
GAAAATTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCC
TCTATAATTTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCAGTT
ATATTTGACCCCTATACAAGGATATAGGTATGGATTGATTCGCACTCTTC
TATTTGCTAATTACCTGTTGCGTCCCCACCATTTGTCGAATATTGCTGTC
CCTCTTCCACTGCATGTTTTTAGCTCCCTTGTCCCCGATCTTGTGACCAT
ATCCGTGCGTTTTTTTATTCTGGTCCTTCCCTCTTATCCCCTTGGTCCAC
TTGTTTGCCTTTCTCCTTGCTTTCTTGTTTTTTTTCCCCACCTTCGCCTC
TGTTTTTTTTTTTTTTTTCCCCTTATGCTTATTTCCTTCCCCCCCTTCTC
TTTTT
GCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGGAACATTACTTTTTGGATGCTATCTGATAA
GTATGAAAAATTTACTAAGCATTTTAAAATACATAATTTGTCAAAAAATT
ATAATATTTTGTCAATGGAGAACTTATACCTTCAGAAGTAAACTATATGG
TTTATCTGGGTAAATGACATTTTCCATTTAAAAACTTTTGTTAAATATGA
TATAGTTACACTTCTACTATTTATATTGTCTTAATTTCAGGGATTACCAT
GCAAGTAGCCACAAGCTTTCTTTGTATTTATGCGGTGAGCAAACATGATT
ACGTGGTAAAAGAAAATACTGAGAGTCTGAATATTTCTGTGAAGAGTAAA
AAAGCAAACACTTAATATGGCAAAGATTAATTACCAACTGATTTCATCAT
TGTGTAAGGATTGTTTGCTTTCCCTTCAACGAAATATATTGATAATTTAA
AAACAATAATTGTGATTAACTGCATCTAAAGGCATGCTTCATATTATCAC
ACAATTTTTATTTGGAATGTAAAACTACTGTTTGTGCTATTATTGCTGAA
CATATTATGAAACTTACACGTTTGTTAACACCTATAAAATATTCTACATA
TTTTTTCTCCTTTTTCTCATAAAATATTATCCTGATTATTTTTCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f12.g1 MSMg01no080_f12.g1 CHROMAT_FILE:
MSMg01no080_f12.g1 PHD_FILE: MSMg01no080_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:13 2005
         (329 letters)



>mm_chr1_99198289_99199017
          Length = 729

 Score =  582 bits (301), Expect = e-171
 Identities = 322/329 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaacattactttttggatgctatctgataagtatgaaaaatttactaagcattttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atggaacattactttttggatgctatctgataagtatgaaaaatttagtaagcattttaa 260

                                                                       
Query: 61  aatacataatttgtcaaaaaattataatattttgtcaatggagaacttataccttcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aatacataatttgtcaaaaaattataatattttgtcaatggagaactaataccttcagaa 320

                                                                       
Query: 121 gtaaactatatggtttatctgggtaaatgacattttccatttaaaaacttttgttaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaactatatggtttatctgggtaaatgacattttccatttaaaaacttttgttaaata 380

                                                                       
Query: 181 tgatatagttacacttctactatttatattgtcttaatttcagggattaccatgcaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgatatagttacacttctactatttatattgtcttaatttcagggattagcatgcaagta 440

                                                                       
Query: 241 gccacaagctttctttgtatttatgcggtgagcaaacatgattacgtggtaaaagaaaat 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccacaagcttgctttgtatttatgcggtgagcaaacatgattacgtggtaaaagaaaat 500

                                        
Query: 301 actgagagtctgaatatttctgtgaagag 329
           ||||||||||||||||   ||||||||||
Sbjct: 501 actgagagtctgaatacacctgtgaagag 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)