CAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTCTATTCACTTACATATTATGGGTTATAGTTGTGCTATGGACA
ACTGAATCACCGGCAACTGCAGCTTGGCGATGTATAGACTGGTGATGGAC
GAGCAAGCAACAATGACCACAGGTCAAAGATGGGTTGTGATTATTATTTT
TTTAAGATTAAAAATCCACAGGTATGGGCTGGAGAGAGATAATTTTATGA
AGGAAGATCAGAGTTACCAGATAAATAATAAGTTGATTAATAATAGACTA
AGAGCCTTACTTTAATCTAACTTTGGTACATTTAGGGCTTAAACTATTGA
AAACGTGTGTGTGTGCGCGCGCGCGCGTGTGCGTGCGCCCCCCTCTTTTT
TTTCTCCCCCTTCCCCCCTTTTCCTTTTTTTTTTTCCTTCCCCCTTTTTT
TCCCCATATCCTTTTTCCCTTCCTCCCCTCTTTCCCTTTTTTTTTTTCCC
CTTCCTTCCCCCATTTCCTTCCCCCCCTTTTTCTCCCACTTCCCCCTATT
TTCCTATTCCTTTTTTCCCCCCTATCCCCCCTCCATCCCCACTCTTTCCC
CCCCCTTTCCCCTTTCCCCTCCTCTTTTTTTTCTTCCCACCCCCTTCCCC
CCTTTTCTTTTTTTTTCTTTCCTCTTTCTCCTTTTCCTTTCCCCCCCCTC
CCTTTTA

CGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGTGTCTCAGTCTATGAATGTGTAAGC
ACTTCATCTGTTCATGGGAACACAATGTTCTGGCAGGCTGGGGTCTCGGC
AGCTGCATGGGTAAGAAACCCGAAGGCTGAGGAGCAGCGCTGCTCAAACA
CTGAACGGTCAGGAGCAGCGTCCCAAGTGCTGCCAGGTTCATCAACAGAA
ATGGACTGTATGTATATGCTGTTTCTGTTCCAGGTACTGACTTACTCTGA
TTATCCAATCTTTGCTGAGAGTTCACGTGGATATGACCTTTACCTCTATT
CAGGATGAAAGGACCCAACGCAGCCAGTTTATTGATGTAACATCACATGT
TCTTTCTCTTTTTTTTTTCTCCCCCCCCCCCGCTTTCCCTTATCTCCCCT
TTTGCCTTTCCTTTCTTTTTATTTCCCCCTACCCTCCCCTTTTTTCCCCT
CCTTTCTTTTTTTTTTCCCCTCTTCTTTTATCCCCCTCCCACTCGTTTCT
CTCTCCCATATCCCTTTGCTCTTCCCCCTTCCTTCCCCTCTTTTTTCTCA
TTTCCCCGATTTTTTCCCTTCCCTTCTCCCCCTACCCCTCTCCCCTATCC
CCTCCCCCCCCCCCCCTTTTACCCACACCTCCTAACTATTACCTTTATTT
TCCCCTT

Query= MSMg01no080_l02.b1 MSMg01no080_l02.b1 CHROMAT_FILE:
MSMg01no080_l02.b1 PHD_FILE: MSMg01no080_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:41 2005
         (116 letters)



>mm_chr1_157325612_157326127
          Length = 516

 Score =  209 bits (108), Expect = 5e-59
 Identities = 111/112 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   agactggtgatggacgagcaagcaacaatgaccacaggtcaaagatgggttgtgattatt 61
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agactggggatggacgagcaagcaacaatgaccacaggtcaaagatgggttgtgattatt 261

                                                               
Query: 62  atttttttaagattaaaaatccacaggtatgggctggagagagataatttta 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atttttttaagattaaaaatccacaggtatgggctggagagagataatttta 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no080_l02.g1 MSMg01no080_l02.g1 CHROMAT_FILE:
MSMg01no080_l02.g1 PHD_FILE: MSMg01no080_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:41 2005
         (214 letters)



>mm_chr1_157465273_157465886
          Length = 614

 Score =  412 bits (213), Expect = e-120
 Identities = 213/213 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtgtctcagtctatgaatgtgtaagcacttcatctgttcatgggaacacaatgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttggtgtctcagtctatgaatgtgtaagcacttcatctgttcatgggaacacaatgttct 354

                                                                       
Query: 61  ggcaggctggggtctcggcagctgcatgggtaagaaacccgaaggctgaggagcagcgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggcaggctggggtctcggcagctgcatgggtaagaaacccgaaggctgaggagcagcgct 294

                                                                       
Query: 121 gctcaaacactgaacggtcaggagcagcgtcccaagtgctgccaggttcatcaacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gctcaaacactgaacggtcaggagcagcgtcccaagtgctgccaggttcatcaacagaaa 234

                                            
Query: 181 tggactgtatgtatatgctgtttctgttccagg 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tggactgtatgtatatgctgtttctgttccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)