Query= MSMg01no080_l03.b1 MSMg01no080_l03.b1 CHROMAT_FILE:
MSMg01no080_l03.b1 PHD_FILE: MSMg01no080_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:41 2005
(471 letters)
>mm_chr1_174754842_174755713
Length = 872
Score = 878 bits (454), Expect = 0.0
Identities = 463/466 (99%), Gaps = 1/466 (0%)
Strand = Plus / Minus
Query: 7 gaattcttttgagt-ccagaaaaggaaatggggaatgcacacaggtatctttcatgcctt 65
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattcttttgagtaacagaaaaggaaatggggaatgcacacaggtatctttcatgcctt 442
Query: 66 gaatggtggcactcacactgtccaactgtgaagttgtcacctagttggtgccattgtgga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatggtggcactcacactgtccaactgtgaagttgtcacctagttggtgccattgtgga 382
Query: 126 tccatttagtagagtagttctgatggggattattcccatttcatgtaagagtcactttct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatttagtagagtagttctgatggggattattcccatttcatgtaagagtcactttct 322
Query: 186 tgtcagtgagtattctaatccatggtgagttcaaggacactacagatttctgagtgactt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcagtgagtattctaatccatggtgagttcaaggacactacagatttctgagtgactt 262
Query: 246 aaaagaagtgaaattgtgaagaaaagacattttattgctgttgttgtagttattattatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaagtgaaattgtgaagaaaagacattttattgctgttgttgtagttattattatt 202
Query: 306 attattattattattatatcttttttactgtccagtcgttattccctcccagtccactct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attattattattattatatcttttttactgtccagtcgttattccctcccagtccactct 142
Query: 366 ccaacacttcctcattccattcctcctcttccatctctaagaggatgccccctactccca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ccaacacttcctcattccattcctcctcttccatctctaagaggatgccccctactccca 82
Query: 426 ccccaccagatatgccccctccctggggccccaagtctctctaggg 471
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 81 ccccaccagacatgccccctccctggggccccaagtctctctaggg 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space: 397382
Effective search space used: 397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_l03.g1 MSMg01no080_l03.g1 CHROMAT_FILE:
MSMg01no080_l03.g1 PHD_FILE: MSMg01no080_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:41 2005
(294 letters)
>mm_chr1_174567356_174568050
Length = 695
Score = 563 bits (291), Expect = e-165
Identities = 294/295 (99%), Gaps = 1/295 (0%)
Strand = Plus / Plus
Query: 1 cttac-cacagacaccgagtcaatgaatacttcttgtttaatcaaaaattgaggggattt 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttacacacagacaccgagtcaatgaatacttcttgtttaatcaaaaattgaggggattt 260
Query: 60 attgtgtagcatcaggaaactactacagatgaaagtattattttaaggaaagaagaagat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtgtagcatcaggaaactactacagatgaaagtattattttaaggaaagaagaagat 320
Query: 120 gaattgccaataggtacaggaatgaaaataaaaacaaaggggaaaaggcacaccaaaaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattgccaataggtacaggaatgaaaataaaaacaaaggggaaaaggcacaccaaaaag 380
Query: 180 caactgtgttatgagtgggttttgtgagaggttaatgcaaaattttcacatctggtgaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactgtgttatgagtgggttttgtgagaggttaatgcaaaattttcacatctggtgaac 440
Query: 240 ttcatttagagtaatcaactagagtagtttgggtaaatagtgtgtgtgtgtgtgt 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatttagagtaatcaactagagtagtttgggtaaatagtgtgtgtgtgtgtgt 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space: 195510
Effective search space used: 195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
