Query= MSMg01no080_o07.b1 MSMg01no080_o07.b1 CHROMAT_FILE:
MSMg01no080_o07.b1 PHD_FILE: MSMg01no080_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:56 2005
(618 letters)
>mm_chr1_104073132_104074149
Length = 1018
Score = 1164 bits (602), Expect = 0.0
Identities = 611/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 5 gaattcattgtctccgacttgagctgtctttgtttatccaa-tgttggtgaagtgtgcct 63
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 gaattcattgtctctgacttgagctgtctttgtttatccaaatgttggtgaagtgtgcct 263
Query: 64 gtaacctgtatctgccccggggatttagacaatatggggagcataatgtctcccagagac 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaacctgtatctgccccagggatttagacaatatggggagcataatgtctcccagagac 323
Query: 124 tggagcaggatttcatttgcatcattttaatttgggagtgcttagatgagatctcctttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggagcaggatttcatttgcatcattttaatttgggagtgcttagatgagatctcctttg 383
Query: 184 tgctctggatttaggcaaatctgaatttgaaccctacatgctacttggtaatcttgtcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgctctggatttaggcaaatctgaatttgaaccctacatgctacttggtaatcttgtcat 443
Query: 244 cctgagcagaacttcttgactccaggtgatagagcctgcatctgaaatacattttataaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgagcagaacttcttgactccaggtgatagagcctgcatctgaaatacattttataaa 503
Query: 304 gcgtacatcagacacattggactgttctacatagactcccagcatccgttacaaggtgga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcgtacatcagacacattggactgttctacatagactcccagcatccgttacaaggtgga 563
Query: 364 agtgctcaaacaaacaatatttaagtacttttaaagttaatattgtaaccttattgagtc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtgctcaaacaaacaatatttaagtacttttaaagttaatattgtaaccttattgagtc 623
Query: 424 cccaaagtcacttttcttccttcaaatttaaaatgctaagagtgccttcatcagaaacag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccaaagtcacttttcttccttcaaatttaaaatgctaagagtgccttcatcagaaacag 683
Query: 484 gatttaaaaggccacgtgtggtagtgctcatgcataattggagtactggggagaaagacc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatttaaaaggccacgtgtggtagtgctcatgcataattggagtactggggagaaagacc 743
Query: 544 tatggttccctggggctcaatgatagtgtcctttttaaatccctggccagtgagagctct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatggttccctggggctcaatgatagtgtcctttttaaatccctggccagtgagagctct 803
Query: 604 atctcaatataata 617
||||||||||||||
Sbjct: 804 atctcaatataata 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_o07.g1 MSMg01no080_o07.g1 CHROMAT_FILE:
MSMg01no080_o07.g1 PHD_FILE: MSMg01no080_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:56 2005
(134 letters)
>mm_chr1_104212716_104213249
Length = 534
Score = 219 bits (113), Expect = 7e-62
Identities = 130/137 (94%), Gaps = 3/137 (2%)
Strand = Plus / Minus
Query: 1 acagtgatttctaaaattgtggattcaggtcacaatcacatcaatagtgaataagaattt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 309 acagtgatttctaaaattgtggattcaggtcacaatcacatgaatagtgaataagaattt 250
Query: 61 cctctccctccttcctctcaagtcattgttgtttattgttgttttgtttggtttt---gt 117
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct: 249 cctctccctccttcctctcaagtctttgttgtttattgttgttttgttttgttttttggt 190
Query: 118 ttgtttgtttgtttgtt 134
|||||| ||||||||||
Sbjct: 189 ttgtttctttgtttgtt 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space: 66276
Effective search space used: 66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
