BAC Information

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BAC

Clone NameMSMg01-081B19
Chromosome1 (Build37)
Map Location 19,260,231 - 19,260,448
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b
Downstream geneLOC100040198, LOC226901, Pkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081B19.T7 (MSMg01no081_b19.b1)MSMg01-081B19.TJ (MSMg01no081_b19.g1)
ACCAG301790AG301791
length721725
length of high quality
(start - end)
221 (46 - 266)244 (69 - 312)
definitionCHROMAT_FILE: MSMg01no081_b19.b1 PHD_FILE: MSMg01no081_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:13 2005CHROMAT_FILE: MSMg01no081_b19.g1 PHD_FILE: MSMg01no081_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTATACCCCGTTATGTCCTGCTGGAGCTGGCTACGTGCCTTTT
TGGCACCCTTCTTGAGGGCAAGGTGTGGGAAGTAAGTGGAAGGAATCATG
GTTCTTACAGCTGGCGAACATCTGGATGAAACAAAATGTGCCCCACAAAG
CTCAAGAAGTATCGAACGCTGAAATAGCCAGTTGAAGTAATTGTTTTTTG
TTTTGACTTGTTTTGTTTTTCAGACCTGTGAGATGCAGGTAAAATCTAAA
CCTTTTCAATTCTGTTCTGTGTTTAGTGTACCCAGACCTCAACTCCTTCA
ACCTGTTGTGCTGTCTGATGTATGCTAATTAATTGCTATAGCTTGTGAAT
AAGTTTATATGATGGTTATTGTGCATGCTTCTGTCTTATGGAGTTTGAGT
TCAGGAGATAGACTTCCAATGATAATAGATGTTAGAATAGTATAAAGCAA
AGAAACTTCTTTGATTTATTGACCCTGTCATCGTCAGATGATTGATCATG
TTGTAACTCTTTTTCTTTTCTTTTCCTTTCCATCTTCTTTCACCTCATGT
TATTCTCTTCCTCTTCTTCTATTTTAATCTTCCTTTCTTACCTTCTTTAT
TATCATTATTACATTCTTTCATTCATTTCATTTTAATCTCATTTCCTTTC
TATTCAATCATTTTTTCTTTC
NCAATGATGTGGTANGCCTGGCGGCCGTCTGTTCACAACTTTAGGTGAAC
TATAGAATTTTCCGCGTAATTCTGTGTTTAGCTCTGTACCCCATTTTTAA
TGGGGTTATTTGAATTTCTAGAGTTCAGCTTCTTATGCTTGTATATATTG
GACATTATTCCCCTATCATATTTAGGATTGGTAAAAATTCTTTCCCAATC
TGTTGGTGGCCTTCTTGCCTTATTGACAGTATCTTTTGCCCTACCGATGC
TTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAG
GCCATTGCTGTTCTGTTTATTATATTTTCCCTTGTGCCCATATCTTCGAG
GGGTTTCCCCACTTTCTCCTCTATAAATGTTAGTGTCTCTAGTTTTATGT
GGACTTCTTTGATGCACTTACACTTGACCTCTGTACCACGATATAAGAAC
GCATCAATTCCCAGTTGAGATATCACCATTTGTTGAAATTGCTGTCTTTC
TTTCCCCTTGGACGGCTTATTTCTTTCTCTCAAACATCATGGAAACTTAG
TTGTTAGTTTTCATATCTGTATTTCAAATTCTAATCCAATGAACTAACTG
CCTGTCCATGCACCTTGACCCATGTCTCTTTTATCCCAATTGCTCCCTTA
CACAACTCTGAAACAACTATGGCGCATCCACCCTGAGGATCCACCTTTTG
TTTAAAATTATTTTTCTCGCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_b19.b1 MSMg01no081_b19.b1 CHROMAT_FILE:
MSMg01no081_b19.b1 PHD_FILE: MSMg01no081_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:13 2005
         (221 letters)



>mm_chr1_19260028_19260648
          Length = 621

 Score =  375 bits (194), Expect = e-108
 Identities = 212/218 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcttataccccgttatgtcctgctggagctggctacgtgcctttttggcaccc 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttataccttgttatgtcctgctggagctggctacgtgcctttttggcaccc 263

                                                                       
Query: 64  ttcttgagggcaaggtgtgggaagtaagtggaaggaatcatggttcttacagctggcgaa 123
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 264 ttcttgagggcaaggtgtgggaagcaagtggaaggaatcatggttcttacagctggggaa 323

                                                                       
Query: 124 catctggatgaaacaaaatgtgccccacaaagctcaagaagtatcgaacgctgaaatagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catctggatgaaacaaaatgtgccccacaaagctcaagaagtatcgaacgctgaaatagc 383

                                                 
Query: 184 cagttgaagtaattgttttttgttttgacttgttttgt 221
           |||||||||||| |||||||||||||| ||||||||||
Sbjct: 384 cagttgaagtaactgttttttgttttgtcttgttttgt 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)